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Protein

Protein NATD1

Gene

Natd1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NATD1
Alternative name(s):
Gene trap locus protein F3-2
Gene trap locus protein F3b
N-acetyltransferase domain-containing protein 1
Gene namesi
Name:Natd1
Synonyms:Gm16515, Gtlf3b
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1344388. Natd1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 110110Protein NATD1PRO_0000320657Add
BLAST

Proteomic databases

MaxQBiQ9DBW3.
PaxDbiQ9DBW3.
PRIDEiQ9DBW3.

2D gel databases

REPRODUCTION-2DPAGEQ9DBW3.

PTM databases

PhosphoSiteiQ9DBW3.

Expressioni

Tissue specificityi

Expressed in the heart, testis, kidney and lung.1 Publication

Developmental stagei

Detected at multiple sites in embryonic day 10.5 embryos, including the genital ridges, the aortic endothelium and endothelium-associated cell clusters within the aortic lumen.1 Publication

Gene expression databases

BgeeiQ9DBW3.
CleanExiMM_GTLF3B.
GenevisibleiQ9DBW3. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000019075.

Structurei

3D structure databases

ProteinModelPortaliQ9DBW3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 10991N-acetyltransferasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the NATD1 family.Curated
Contains 1 N-acetyltransferase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG68119.
GeneTreeiENSGT00390000014840.
HOGENOMiHOG000167985.
HOVERGENiHBG055172.
InParanoidiQ9DBW3.
KOiK06975.
OMAiYFEHIYQ.
OrthoDBiEOG72ZCGQ.
PhylomeDBiQ9DBW3.
TreeFamiTF314063.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
IPR031165. GNAT_YJDJ.
[Graphical view]
PfamiPF14542. Acetyltransf_CG. 1 hit.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 1 hit.
PROSITEiPS51729. GNAT_YJDJ. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9DBW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHATPPSAL EQGGPIRVEH DRQRRQFSVR LNGCHDRAVL LYEYVGKRIV
60 70 80 90 100
DLQHTEVPDA YRGRGIAKHL AKAALDFVVE EDLKAHLTCW YIQKYVKENP
110
LPQYLERLQP
Length:110
Mass (Da):12,731
Last modified:June 1, 2001 - v1
Checksum:iA98C9C2B503D149A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK004720 mRNA. Translation: BAB23503.1.
AK080453 mRNA. Translation: BAC37922.1.
AK089179 mRNA. Translation: BAC40780.1.
AL603830 Genomic DNA. Translation: CAI25795.1.
BC034332 mRNA. Translation: AAH34332.1.
BC038816 mRNA. Translation: AAH38816.1.
CCDSiCCDS24802.1.
RefSeqiNP_079570.1. NM_025294.5.
UniGeneiMm.22780.

Genome annotation databases

EnsembliENSMUST00000019075; ENSMUSP00000019075; ENSMUSG00000018931.
GeneIDi24083.
KEGGimmu:24083.
UCSCiuc007jgu.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK004720 mRNA. Translation: BAB23503.1.
AK080453 mRNA. Translation: BAC37922.1.
AK089179 mRNA. Translation: BAC40780.1.
AL603830 Genomic DNA. Translation: CAI25795.1.
BC034332 mRNA. Translation: AAH34332.1.
BC038816 mRNA. Translation: AAH38816.1.
CCDSiCCDS24802.1.
RefSeqiNP_079570.1. NM_025294.5.
UniGeneiMm.22780.

3D structure databases

ProteinModelPortaliQ9DBW3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000019075.

PTM databases

PhosphoSiteiQ9DBW3.

2D gel databases

REPRODUCTION-2DPAGEQ9DBW3.

Proteomic databases

MaxQBiQ9DBW3.
PaxDbiQ9DBW3.
PRIDEiQ9DBW3.

Protocols and materials databases

DNASUi24083.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000019075; ENSMUSP00000019075; ENSMUSG00000018931.
GeneIDi24083.
KEGGimmu:24083.
UCSCiuc007jgu.2. mouse.

Organism-specific databases

CTDi256302.
MGIiMGI:1344388. Natd1.

Phylogenomic databases

eggNOGiNOG68119.
GeneTreeiENSGT00390000014840.
HOGENOMiHOG000167985.
HOVERGENiHBG055172.
InParanoidiQ9DBW3.
KOiK06975.
OMAiYFEHIYQ.
OrthoDBiEOG72ZCGQ.
PhylomeDBiQ9DBW3.
TreeFamiTF314063.

Miscellaneous databases

NextBioi304085.
PROiQ9DBW3.
SOURCEiSearch...

Gene expression databases

BgeeiQ9DBW3.
CleanExiMM_GTLF3B.
GenevisibleiQ9DBW3. MM.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
IPR031165. GNAT_YJDJ.
[Graphical view]
PfamiPF14542. Acetyltransf_CG. 1 hit.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 1 hit.
PROSITEiPS51729. GNAT_YJDJ. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Cerebellum and Lung.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Mammary tumor.
  4. "Gene trap screening using negative selection: identification of two tandem, differentially expressed loci with potential hematopoietic function."
    Cannon J.P., Colicos S.M., Belmont J.W.
    Dev. Genet. 25:49-63(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.

Entry informationi

Entry nameiNATD1_MOUSE
AccessioniPrimary (citable) accession number: Q9DBW3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: June 1, 2001
Last modified: July 22, 2015
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.