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Q9DBW3

- NATD1_MOUSE

UniProt

Q9DBW3 - NATD1_MOUSE

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Protein

Protein NATD1

Gene

Natd1

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NATD1
Alternative name(s):
Gene trap locus protein F3-2
Gene trap locus protein F3b
N-acetyltransferase domain-containing protein 1
Gene namesi
Name:Natd1
Synonyms:Gm16515, Gtlf3b
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 11

Organism-specific databases

MGIiMGI:1344388. Natd1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 110110Protein NATD1PRO_0000320657Add
BLAST

Proteomic databases

MaxQBiQ9DBW3.
PaxDbiQ9DBW3.
PRIDEiQ9DBW3.

2D gel databases

REPRODUCTION-2DPAGEQ9DBW3.

PTM databases

PhosphoSiteiQ9DBW3.

Expressioni

Tissue specificityi

Expressed in the heart, testis, kidney and lung.1 Publication

Developmental stagei

Detected at multiple sites in embryonic day 10.5 embryos, including the genital ridges, the aortic endothelium and endothelium-associated cell clusters within the aortic lumen.1 Publication

Gene expression databases

BgeeiQ9DBW3.
CleanExiMM_GTLF3B.
GenevestigatoriQ9DBW3.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000019075.

Structurei

3D structure databases

ProteinModelPortaliQ9DBW3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 10991N-acetyltransferasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the NATD1 family.Curated
Contains 1 N-acetyltransferase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG68119.
GeneTreeiENSGT00390000014840.
HOGENOMiHOG000167985.
HOVERGENiHBG055172.
InParanoidiQ9DBW3.
KOiK06975.
OMAiCPIRVEH.
OrthoDBiEOG72ZCGQ.
PhylomeDBiQ9DBW3.
TreeFamiTF314063.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 1 hit.
PROSITEiPS51729. GNAT_YJDJ. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9DBW3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAHATPPSAL EQGGPIRVEH DRQRRQFSVR LNGCHDRAVL LYEYVGKRIV
60 70 80 90 100
DLQHTEVPDA YRGRGIAKHL AKAALDFVVE EDLKAHLTCW YIQKYVKENP
110
LPQYLERLQP
Length:110
Mass (Da):12,731
Last modified:June 1, 2001 - v1
Checksum:iA98C9C2B503D149A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK004720 mRNA. Translation: BAB23503.1.
AK080453 mRNA. Translation: BAC37922.1.
AK089179 mRNA. Translation: BAC40780.1.
AL603830 Genomic DNA. Translation: CAI25795.1.
BC034332 mRNA. Translation: AAH34332.1.
BC038816 mRNA. Translation: AAH38816.1.
CCDSiCCDS24802.1.
RefSeqiNP_079570.1. NM_025294.5.
UniGeneiMm.22780.

Genome annotation databases

EnsembliENSMUST00000019075; ENSMUSP00000019075; ENSMUSG00000018931.
GeneIDi24083.
KEGGimmu:24083.
UCSCiuc007jgu.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK004720 mRNA. Translation: BAB23503.1 .
AK080453 mRNA. Translation: BAC37922.1 .
AK089179 mRNA. Translation: BAC40780.1 .
AL603830 Genomic DNA. Translation: CAI25795.1 .
BC034332 mRNA. Translation: AAH34332.1 .
BC038816 mRNA. Translation: AAH38816.1 .
CCDSi CCDS24802.1.
RefSeqi NP_079570.1. NM_025294.5.
UniGenei Mm.22780.

3D structure databases

ProteinModelPortali Q9DBW3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000019075.

PTM databases

PhosphoSitei Q9DBW3.

2D gel databases

REPRODUCTION-2DPAGE Q9DBW3.

Proteomic databases

MaxQBi Q9DBW3.
PaxDbi Q9DBW3.
PRIDEi Q9DBW3.

Protocols and materials databases

DNASUi 24083.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000019075 ; ENSMUSP00000019075 ; ENSMUSG00000018931 .
GeneIDi 24083.
KEGGi mmu:24083.
UCSCi uc007jgu.2. mouse.

Organism-specific databases

CTDi 256302.
MGIi MGI:1344388. Natd1.

Phylogenomic databases

eggNOGi NOG68119.
GeneTreei ENSGT00390000014840.
HOGENOMi HOG000167985.
HOVERGENi HBG055172.
InParanoidi Q9DBW3.
KOi K06975.
OMAi CPIRVEH.
OrthoDBi EOG72ZCGQ.
PhylomeDBi Q9DBW3.
TreeFami TF314063.

Miscellaneous databases

NextBioi 304085.
PROi Q9DBW3.
SOURCEi Search...

Gene expression databases

Bgeei Q9DBW3.
CleanExi MM_GTLF3B.
Genevestigatori Q9DBW3.

Family and domain databases

Gene3Di 3.40.630.30. 1 hit.
InterProi IPR016181. Acyl_CoA_acyltransferase.
[Graphical view ]
SUPFAMi SSF55729. SSF55729. 1 hit.
PROSITEi PS51729. GNAT_YJDJ. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Cerebellum and Lung.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Mammary tumor.
  4. "Gene trap screening using negative selection: identification of two tandem, differentially expressed loci with potential hematopoietic function."
    Cannon J.P., Colicos S.M., Belmont J.W.
    Dev. Genet. 25:49-63(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.

Entry informationi

Entry nameiNATD1_MOUSE
AccessioniPrimary (citable) accession number: Q9DBW3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: June 1, 2001
Last modified: October 29, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3