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Protein

Vesicular integral-membrane protein VIP36

Gene

Lman2

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Plays a role as an intracellular lectin in the early secretory pathway. Interacts with N-acetyl-D-galactosamine and high-mannose type glycans and may also bind to O-linked glycans. Involved in the transport and sorting of glycoproteins carrying high mannose-type glycans (By similarity).By similarity

Cofactori

Ca2+By similarityNote: Binds 2 calcium ions per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei98CarbohydratePROSITE-ProRule annotation1
Binding sitei133CarbohydratePROSITE-ProRule annotation1
Metal bindingi164CalciumPROSITE-ProRule annotation1
Metal bindingi166Calcium; via carbonyl oxygenPROSITE-ProRule annotation1
Metal bindingi168CalciumPROSITE-ProRule annotation1
Binding sitei192CarbohydratePROSITE-ProRule annotation1
Metal bindingi195CalciumPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

Calcium, Lectin, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Vesicular integral-membrane protein VIP36
Alternative name(s):
Lectin mannose-binding 2
Vesicular integral-membrane protein 36
Short name:
VIP36
Gene namesi
Name:Lman2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 13

Organism-specific databases

MGIiMGI:1914140. Lman2.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini47 – 324LumenalSequence analysisAdd BLAST278
Transmembranei325 – 347HelicalSequence analysisAdd BLAST23
Topological domaini348 – 358CytoplasmicSequence analysisAdd BLAST11

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 46Sequence analysisAdd BLAST46
ChainiPRO_000001766747 – 358Vesicular integral-membrane protein VIP36Add BLAST312

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi185N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi204 ↔ 241PROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

EPDiQ9DBH5.
MaxQBiQ9DBH5.
PaxDbiQ9DBH5.
PeptideAtlasiQ9DBH5.
PRIDEiQ9DBH5.
TopDownProteomicsiQ9DBH5.

PTM databases

PhosphoSitePlusiQ9DBH5.
SwissPalmiQ9DBH5.

Expressioni

Gene expression databases

BgeeiENSMUSG00000021484.
CleanExiMM_LMAN2.
GenevisibleiQ9DBH5. MM.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

IntActiQ9DBH5. 5 interactors.
MINTiMINT-1858792.
STRINGi10090.ENSMUSP00000021940.

Structurei

3D structure databases

ProteinModelPortaliQ9DBH5.
SMRiQ9DBH5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 278L-type lectin-likePROSITE-ProRule annotationAdd BLAST225

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni166 – 168Carbohydrate bindingPROSITE-ProRule annotation3
Regioni262 – 264Carbohydrate bindingPROSITE-ProRule annotation3

Sequence similaritiesi

Contains 1 L-type lectin-like domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3839. Eukaryota.
ENOG410YH8V. LUCA.
GeneTreeiENSGT00530000062977.
HOGENOMiHOG000164540.
HOVERGENiHBG052334.
InParanoidiQ9DBH5.
KOiK10082.
OMAiRNEWKSC.
OrthoDBiEOG091G0AZ1.
TreeFamiTF313311.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR005052. Lectin_leg.
[Graphical view]
PfamiPF03388. Lectin_leg-like. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS51328. L_LECTIN_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9DBH5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAEAWLWRW GWGWGQRCPG RPGLPGPGPS PTTFLHLLLL LGPVAADITD
60 70 80 90 100
GNSEHLKREH SLIKPYQGVG SSSMPLWDFQ GSTMLTSQYV RLTPDERSKE
110 120 130 140 150
GSIWNHQPCF LKDWEMHVHF KVHGTGKKNL HGDGIALWYT RDRLVPGPVF
160 170 180 190 200
GSKDNFHGLA IFLDTYPNDE TTERVFPYIS VMVNNGSLSY DHSKDGRWSE
210 220 230 240 250
LAGCTADFRN RDHDTFLAVR YSRGRLTVMT DLEDKNEWKN CIDITGVRLP
260 270 280 290 300
TGYYFGASAG TGDLSDNHDI ISIKLFQLTV ERTPEEESID WTKIEPGVNF
310 320 330 340 350
LKSPKDNVDD PTGNFRNGPL TGWRVFLLLL CALLGVVVCA VVGAVVFQKR

QERNKRFY
Length:358
Mass (Da):40,430
Last modified:July 27, 2011 - v2
Checksum:i14FB29BF3FDD3B54
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti219V → L in BAB29313 (PubMed:16141072).Curated1
Sequence conflicti328L → V in BAB23695 (PubMed:16141072).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK004952 mRNA. Translation: BAB23695.1.
AK014384 mRNA. Translation: BAB29313.1.
AK083442 mRNA. Translation: BAC38916.1.
AK150383 mRNA. Translation: BAE29514.1.
AK166953 mRNA. Translation: BAE39136.1.
AK169401 mRNA. Translation: BAE41147.1.
CH466546 Genomic DNA. Translation: EDL41187.1.
BC049221 mRNA. Translation: AAH49221.1.
BC055327 mRNA. Translation: AAH55327.1.
CCDSiCCDS26544.1.
RefSeqiNP_080104.2. NM_025828.3.
UniGeneiMm.38868.

Genome annotation databases

EnsembliENSMUST00000021940; ENSMUSP00000021940; ENSMUSG00000021484.
GeneIDi66890.
KEGGimmu:66890.
UCSCiuc007qqo.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK004952 mRNA. Translation: BAB23695.1.
AK014384 mRNA. Translation: BAB29313.1.
AK083442 mRNA. Translation: BAC38916.1.
AK150383 mRNA. Translation: BAE29514.1.
AK166953 mRNA. Translation: BAE39136.1.
AK169401 mRNA. Translation: BAE41147.1.
CH466546 Genomic DNA. Translation: EDL41187.1.
BC049221 mRNA. Translation: AAH49221.1.
BC055327 mRNA. Translation: AAH55327.1.
CCDSiCCDS26544.1.
RefSeqiNP_080104.2. NM_025828.3.
UniGeneiMm.38868.

3D structure databases

ProteinModelPortaliQ9DBH5.
SMRiQ9DBH5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9DBH5. 5 interactors.
MINTiMINT-1858792.
STRINGi10090.ENSMUSP00000021940.

PTM databases

PhosphoSitePlusiQ9DBH5.
SwissPalmiQ9DBH5.

Proteomic databases

EPDiQ9DBH5.
MaxQBiQ9DBH5.
PaxDbiQ9DBH5.
PeptideAtlasiQ9DBH5.
PRIDEiQ9DBH5.
TopDownProteomicsiQ9DBH5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000021940; ENSMUSP00000021940; ENSMUSG00000021484.
GeneIDi66890.
KEGGimmu:66890.
UCSCiuc007qqo.1. mouse.

Organism-specific databases

CTDi10960.
MGIiMGI:1914140. Lman2.

Phylogenomic databases

eggNOGiKOG3839. Eukaryota.
ENOG410YH8V. LUCA.
GeneTreeiENSGT00530000062977.
HOGENOMiHOG000164540.
HOVERGENiHBG052334.
InParanoidiQ9DBH5.
KOiK10082.
OMAiRNEWKSC.
OrthoDBiEOG091G0AZ1.
TreeFamiTF313311.

Miscellaneous databases

ChiTaRSiLman2. mouse.
PROiQ9DBH5.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000021484.
CleanExiMM_LMAN2.
GenevisibleiQ9DBH5. MM.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR005052. Lectin_leg.
[Graphical view]
PfamiPF03388. Lectin_leg-like. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS51328. L_LECTIN_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLMAN2_MOUSE
AccessioniPrimary (citable) accession number: Q9DBH5
Secondary accession number(s): Q8BJL4, Q9CXG7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: July 27, 2011
Last modified: November 2, 2016
This is version 112 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.