Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein DDI1 homolog 1

Gene

Ddi1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Protein family/group databases

MEROPSiA28.A01.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein DDI1 homolog 1
Gene namesi
Name:Ddi1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 9

Organism-specific databases

MGIiMGI:1919079. Ddi1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 408408Protein DDI1 homolog 1PRO_0000287088Add
BLAST

Proteomic databases

EPDiQ9DAF3.
PaxDbiQ9DAF3.
PRIDEiQ9DAF3.

PTM databases

iPTMnetiQ9DAF3.
PhosphoSiteiQ9DAF3.

Expressioni

Gene expression databases

BgeeiQ9DAF3.
GenevisibleiQ9DAF3. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000053223.

Structurei

Secondary structure

408
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi1 – 77Combined sources
Turni9 – 124Combined sources
Beta strandi16 – 216Combined sources
Helixi27 – 3711Combined sources
Helixi42 – 443Combined sources
Beta strandi47 – 493Combined sources
Beta strandi52 – 543Combined sources
Beta strandi57 – 604Combined sources
Helixi61 – 644Combined sources
Beta strandi70 – 745Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V5ONMR-A1-89[»]
ProteinModelPortaliQ9DAF3.
SMRiQ9DAF3. Positions 1-94, 247-373.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9DAF3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 8181Ubiquitin-likePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the DDI1 family.Curated
Contains 1 ubiquitin-like domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0012. Eukaryota.
ENOG410XPA0. LUCA.
GeneTreeiENSGT00510000047125.
HOGENOMiHOG000234736.
HOVERGENiHBG058638.
InParanoidiQ9DAF3.
KOiK11885.
OMAiAQIQIEG.
OrthoDBiEOG700886.
PhylomeDBiQ9DAF3.
TreeFamiTF333421.

Family and domain databases

InterProiIPR019103. Peptidase_aspartic_DDI1-type.
IPR021109. Peptidase_aspartic_dom.
IPR029071. Ubiquitin-rel_dom.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF09668. Asp_protease. 1 hit.
PF00240. ubiquitin. 1 hit.
[Graphical view]
SUPFAMiSSF50630. SSF50630. 1 hit.
SSF54236. SSF54236. 1 hit.
PROSITEiPS50053. UBIQUITIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9DAF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLITVYCVRR DLTEVTFSLQ VNPDFELSNF RVLCELESGV PAEEAQIVYM
60 70 80 90 100
EQLLTDDHCS LGSYGLKDGD MVVLLQKDNV GLRTPGRTPN HPRADFTGSG
110 120 130 140 150
SAVPGTSSSR HPHQHQHHYH HHQRIPSTQQ AHGLASGENM TFAQELDSPA
160 170 180 190 200
LIRSMLLSNP HDLSLLKERN PALAEALLSG NLETFSQVLM EQQRERTLRE
210 220 230 240 250
QEMFRLYSTN PFDQETQARI EEEIRQQNIE ENMNIAMEEA PESFGQVAML
260 270 280 290 300
YINCKVNGHP LKAFVDSGAQ MTIMSQACAE RCNIMRLVDR RWGGVAKGVG
310 320 330 340 350
TQRIMGRVHL AQIQIEGDFL QCSFSILEEQ PMDILLGLDM LRRHQCSIDL
360 370 380 390 400
KKNVLVIGTT GSQTHFLPEG ELPLCAKLLS GTVQEESSDR EVGGTIKHPV

KGPGRKKH
Length:408
Mass (Da):45,713
Last modified:June 1, 2001 - v1
Checksum:i56A496D962DC878C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK005882 mRNA. Translation: BAB24297.1.
CCDSiCCDS40527.1.
RefSeqiNP_082218.1. NM_027942.1.
UniGeneiMm.141452.

Genome annotation databases

EnsembliENSMUST00000051706; ENSMUSP00000053223; ENSMUSG00000047619.
GeneIDi71829.
KEGGimmu:71829.
UCSCiuc009oca.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK005882 mRNA. Translation: BAB24297.1.
CCDSiCCDS40527.1.
RefSeqiNP_082218.1. NM_027942.1.
UniGeneiMm.141452.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V5ONMR-A1-89[»]
ProteinModelPortaliQ9DAF3.
SMRiQ9DAF3. Positions 1-94, 247-373.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000053223.

Protein family/group databases

MEROPSiA28.A01.

PTM databases

iPTMnetiQ9DAF3.
PhosphoSiteiQ9DAF3.

Proteomic databases

EPDiQ9DAF3.
PaxDbiQ9DAF3.
PRIDEiQ9DAF3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000051706; ENSMUSP00000053223; ENSMUSG00000047619.
GeneIDi71829.
KEGGimmu:71829.
UCSCiuc009oca.1. mouse.

Organism-specific databases

CTDi414301.
MGIiMGI:1919079. Ddi1.

Phylogenomic databases

eggNOGiKOG0012. Eukaryota.
ENOG410XPA0. LUCA.
GeneTreeiENSGT00510000047125.
HOGENOMiHOG000234736.
HOVERGENiHBG058638.
InParanoidiQ9DAF3.
KOiK11885.
OMAiAQIQIEG.
OrthoDBiEOG700886.
PhylomeDBiQ9DAF3.
TreeFamiTF333421.

Miscellaneous databases

EvolutionaryTraceiQ9DAF3.
NextBioi334624.
PROiQ9DAF3.
SOURCEiSearch...

Gene expression databases

BgeeiQ9DAF3.
GenevisibleiQ9DAF3. MM.

Family and domain databases

InterProiIPR019103. Peptidase_aspartic_DDI1-type.
IPR021109. Peptidase_aspartic_dom.
IPR029071. Ubiquitin-rel_dom.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF09668. Asp_protease. 1 hit.
PF00240. ubiquitin. 1 hit.
[Graphical view]
SUPFAMiSSF50630. SSF50630. 1 hit.
SSF54236. SSF54236. 1 hit.
PROSITEiPS50053. UBIQUITIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Testis.
  2. "Solution structure of the ubiquitin-like domain from mouse hypothetical 1700011N24Rik protein."
    RIKEN structural genomics initiative (RSGI)
    Submitted (MAY-2004) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 1-89.

Entry informationi

Entry nameiDDI1_MOUSE
AccessioniPrimary (citable) accession number: Q9DAF3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: June 1, 2001
Last modified: March 16, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.