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Protein

Radial spoke head protein 9 homolog

Gene

Rsph9

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable component of the axonemal radial spoke head (By similarity). Radial spokes are regularly spaced along cilia, sperm and flagella axonemes. They consist of a thin stalk, which is attached to a subfiber of the outer doublet microtubule, and a bulbous head, which is attached to the stalk and appears to interact with the projections from the central pair of microtubules.By similarity

GO - Biological processi

  • axoneme assembly Source: BHF-UCL
  • cilium movement Source: BHF-UCL
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Radial spoke head protein 9 homolog
Gene namesi
Name:Rsph9
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 17

Organism-specific databases

MGIiMGI:1922814. Rsph9.

Subcellular locationi

GO - Cellular componenti

  • axoneme Source: BHF-UCL
  • cytoplasm Source: UniProtKB-KW
  • cytoskeleton Source: UniProtKB-KW
  • motile cilium Source: BHF-UCL
Complete GO annotation...

Keywords - Cellular componenti

Cell projection, Cilium, Cytoplasm, Cytoskeleton

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 276276Radial spoke head protein 9 homologPRO_0000089562Add
BLAST

Proteomic databases

MaxQBiQ9D9V4.
PaxDbiQ9D9V4.
PRIDEiQ9D9V4.

PTM databases

PhosphoSiteiQ9D9V4.

Expressioni

Tissue specificityi

Expressed in the embryonic node at E7.5 and in the nasal, lung, tracheal and brain ventricle epithelium at E18.5-E19.5.1 Publication

Gene expression databases

BgeeiQ9D9V4.
CleanExiMM_1700027N10RIK.
ExpressionAtlasiQ9D9V4. baseline and differential.
GenevisibleiQ9D9V4. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000024762.

Structurei

3D structure databases

ProteinModelPortaliQ9D9V4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the flagellar radial spoke RSP9 family.Curated

Phylogenomic databases

eggNOGiENOG410IH9Y. Eukaryota.
ENOG410Z386. LUCA.
GeneTreeiENSGT00390000018686.
HOGENOMiHOG000258906.
InParanoidiQ9D9V4.
KOiK19757.
OMAiYHAPRTK.
PhylomeDBiQ9D9V4.
TreeFamiTF323644.

Family and domain databases

InterProiIPR006802. Radial_spoke.
[Graphical view]
PfamiPF04712. Radial_spoke. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9D9V4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDADSLLLSL ELASGSGQGL SPDRRASLLT SLMLVKRDYR FARVLFWGRI
60 70 80 90 100
LGLVADYYIA QGLSEDQLAP RKTLYSLNCT EWSLLPPATE EMAMQISVVS
110 120 130 140 150
GRFMGDPSHE YEHTELQKVN EGEKVFDEEV VVQIKEETRL VSIIDQIDKA
160 170 180 190 200
VAIIPRGALF KTPFGVTHVN RTFEGLPLSE VRKLSSYFHF REAIDLKNKT
210 220 230 240 250
LLEKSDLEPS LDFLDSLEYD IPRGSWSIQM ERGNALVVLR SLLWPGLTFY
260 270
HAPRTKNYGY IYVGTGEKNM DLPFML
Length:276
Mass (Da):31,331
Last modified:June 1, 2001 - v1
Checksum:i5C9D9B8679CE4750
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK006440 mRNA. Translation: BAB24590.1.
BC019423 mRNA. Translation: AAH19423.1.
CCDSiCCDS28820.1.
RefSeqiNP_083614.1. NM_029338.3.
UniGeneiMm.17993.

Genome annotation databases

EnsembliENSMUST00000024762; ENSMUSP00000024762; ENSMUSG00000023966.
GeneIDi75564.
KEGGimmu:75564.
UCSCiuc008crt.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK006440 mRNA. Translation: BAB24590.1.
BC019423 mRNA. Translation: AAH19423.1.
CCDSiCCDS28820.1.
RefSeqiNP_083614.1. NM_029338.3.
UniGeneiMm.17993.

3D structure databases

ProteinModelPortaliQ9D9V4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000024762.

PTM databases

PhosphoSiteiQ9D9V4.

Proteomic databases

MaxQBiQ9D9V4.
PaxDbiQ9D9V4.
PRIDEiQ9D9V4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000024762; ENSMUSP00000024762; ENSMUSG00000023966.
GeneIDi75564.
KEGGimmu:75564.
UCSCiuc008crt.1. mouse.

Organism-specific databases

CTDi221421.
MGIiMGI:1922814. Rsph9.

Phylogenomic databases

eggNOGiENOG410IH9Y. Eukaryota.
ENOG410Z386. LUCA.
GeneTreeiENSGT00390000018686.
HOGENOMiHOG000258906.
InParanoidiQ9D9V4.
KOiK19757.
OMAiYHAPRTK.
PhylomeDBiQ9D9V4.
TreeFamiTF323644.

Miscellaneous databases

NextBioi343378.
PROiQ9D9V4.
SOURCEiSearch...

Gene expression databases

BgeeiQ9D9V4.
CleanExiMM_1700027N10RIK.
ExpressionAtlasiQ9D9V4. baseline and differential.
GenevisibleiQ9D9V4. MM.

Family and domain databases

InterProiIPR006802. Radial_spoke.
[Graphical view]
PfamiPF04712. Radial_spoke. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Testis.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Salivary gland.
  3. Cited for: TISSUE SPECIFICITY.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Testis.

Entry informationi

Entry nameiRSPH9_MOUSE
AccessioniPrimary (citable) accession number: Q9D9V4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: June 1, 2001
Last modified: May 11, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.