SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q9D8C2

- TSN13_MOUSE

UniProt

Q9D8C2 - TSN13_MOUSE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Tetraspanin-13
Gene
Tspan13, Tm4sf13
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Protein family/group databases

TCDBi8.A.40.1.8. the tetraspanin (tetraspanin) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Tetraspanin-13
Short name:
Tspan-13
Alternative name(s):
Transmembrane 4 superfamily member 13
Gene namesi
Name:Tspan13
Synonyms:Tm4sf13
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 12

Organism-specific databases

MGIiMGI:1913359. Tspan13.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1919Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei20 – 4021Helical; Reviewed prediction
Add
BLAST
Topological domaini41 – 444Extracellular Reviewed prediction
Transmembranei45 – 6521Helical; Reviewed prediction
Add
BLAST
Topological domaini66 – 727Cytoplasmic Reviewed prediction
Transmembranei73 – 9321Helical; Reviewed prediction
Add
BLAST
Topological domaini94 – 16774Extracellular Reviewed prediction
Add
BLAST
Transmembranei168 – 18821Helical; Reviewed prediction
Add
BLAST
Topological domaini189 – 20416Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 204204Tetraspanin-13
PRO_0000219259Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi113 – 1131N-linked (GlcNAc...) By similarity
Glycosylationi137 – 1371N-linked (GlcNAc...) By similarity

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9D8C2.
PRIDEiQ9D8C2.

PTM databases

PhosphoSiteiQ9D8C2.

Expressioni

Gene expression databases

ArrayExpressiQ9D8C2.
BgeeiQ9D8C2.
CleanExiMM_TSPAN13.
GenevestigatoriQ9D8C2.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000020896.

Structurei

3D structure databases

ProteinModelPortaliQ9D8C2.
SMRiQ9D8C2. Positions 114-165.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG279074.
GeneTreeiENSGT00500000044851.
HOGENOMiHOG000005650.
HOVERGENiHBG009195.
InParanoidiA7NSH9.
KOiK17356.
OMAiDTCPASC.
OrthoDBiEOG7D2FFF.
PhylomeDBiQ9D8C2.
TreeFamiTF323367.

Family and domain databases

InterProiIPR000301. Tetraspanin.
IPR018499. Tetraspanin/Peripherin.
IPR008952. Tetraspanin_EC2.
[Graphical view]
PfamiPF00335. Tetraspannin. 1 hit.
[Graphical view]
PIRSFiPIRSF002419. Tetraspanin. 1 hit.
PRINTSiPR00259. TMFOUR.
SUPFAMiSSF48652. SSF48652. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9D8C2-1 [UniParc]FASTAAdd to Basket

« Hide

MVCGGFSCSK NCLCALNLLY TLVSLLLIGI AAWGIGFGLI SSLRVVGVVI    50
AVGIFLFLIA LVGLIGAVKH HQVLLFFYMI ILLLVFIVQF SVSCACLALN 100
REQQGQLLEV GWNNTASARN DIQRNLNCCG FRSYNPNDTC PASCAKSTQK 150
CSSCAPIIGE YAGEVLRFVG GIGLFFSFTE ILGVWLTYRY RNQKDPRANP 200
SAFL 204
Length:204
Mass (Da):22,219
Last modified:June 1, 2001 - v1
Checksum:i76B95421EBCAE5F0
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti97 – 971L → S in BAC41170. 1 Publication
Sequence conflicti157 – 1571I → M in BAC41170. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK008175 mRNA. Translation: BAB25510.1.
AK090217 mRNA. Translation: BAC41139.1.
AK090322 mRNA. Translation: BAC41170.1.
AK158761 mRNA. Translation: BAE34648.1.
AK165768 mRNA. Translation: BAE38371.1.
AK167495 mRNA. Translation: BAE39572.1.
AK167979 mRNA. Translation: BAE39971.1.
CT030196 Genomic DNA. Translation: CAO91837.1.
BC018317 mRNA. Translation: AAH18317.1.
CCDSiCCDS25882.1.
RefSeqiNP_079635.1. NM_025359.3.
UniGeneiMm.254663.

Genome annotation databases

EnsembliENSMUST00000020896; ENSMUSP00000020896; ENSMUSG00000020577.
GeneIDi66109.
KEGGimmu:66109.
UCSCiuc007njn.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK008175 mRNA. Translation: BAB25510.1 .
AK090217 mRNA. Translation: BAC41139.1 .
AK090322 mRNA. Translation: BAC41170.1 .
AK158761 mRNA. Translation: BAE34648.1 .
AK165768 mRNA. Translation: BAE38371.1 .
AK167495 mRNA. Translation: BAE39572.1 .
AK167979 mRNA. Translation: BAE39971.1 .
CT030196 Genomic DNA. Translation: CAO91837.1 .
BC018317 mRNA. Translation: AAH18317.1 .
CCDSi CCDS25882.1.
RefSeqi NP_079635.1. NM_025359.3.
UniGenei Mm.254663.

3D structure databases

ProteinModelPortali Q9D8C2.
SMRi Q9D8C2. Positions 114-165.
ModBasei Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000020896.

Protein family/group databases

TCDBi 8.A.40.1.8. the tetraspanin (tetraspanin) family.

PTM databases

PhosphoSitei Q9D8C2.

Proteomic databases

PaxDbi Q9D8C2.
PRIDEi Q9D8C2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000020896 ; ENSMUSP00000020896 ; ENSMUSG00000020577 .
GeneIDi 66109.
KEGGi mmu:66109.
UCSCi uc007njn.1. mouse.

Organism-specific databases

CTDi 27075.
MGIi MGI:1913359. Tspan13.

Phylogenomic databases

eggNOGi NOG279074.
GeneTreei ENSGT00500000044851.
HOGENOMi HOG000005650.
HOVERGENi HBG009195.
InParanoidi A7NSH9.
KOi K17356.
OMAi DTCPASC.
OrthoDBi EOG7D2FFF.
PhylomeDBi Q9D8C2.
TreeFami TF323367.

Miscellaneous databases

NextBioi 320654.
PROi Q9D8C2.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9D8C2.
Bgeei Q9D8C2.
CleanExi MM_TSPAN13.
Genevestigatori Q9D8C2.

Family and domain databases

InterProi IPR000301. Tetraspanin.
IPR018499. Tetraspanin/Peripherin.
IPR008952. Tetraspanin_EC2.
[Graphical view ]
Pfami PF00335. Tetraspannin. 1 hit.
[Graphical view ]
PIRSFi PIRSF002419. Tetraspanin. 1 hit.
PRINTSi PR00259. TMFOUR.
SUPFAMi SSF48652. SSF48652. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and DBA/2.
    Tissue: Brain, Placenta, Seminal vesicle and Visual cortex.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Salivary gland.

Entry informationi

Entry nameiTSN13_MOUSE
AccessioniPrimary (citable) accession number: Q9D8C2
Secondary accession number(s): A7NSH9, Q3TMS0, Q8BTH3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi