Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q9D2V5 (CT004_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein C20orf4 homolog
OrganismMus musculus (Mouse)
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length384 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the AAR2 family.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 384384Uncharacterized protein C20orf4 homolog
PRO_0000209707

Experimental info

Sequence conflict1661F → S in BAE38626. Ref.1
Sequence conflict1661F → S in AAH19988. Ref.4
Sequence conflict1661F → S in AAH20112. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q9D2V5 [UniParc].

Last modified July 27, 2011. Version 3.
Checksum: 672FEC1DFDE3630F

FASTA38443,408
        10         20         30         40         50         60 
MSSMQMDPEL AKQLFFEGAT VVILNMPKGT EFGIDYNSWE VGPKFRGVKM IPPGIHFLYY 

        70         80         90        100        110        120 
SSVDKANPRE VGPRMGFFLS LKQRGLTVLR WNAVQEEVDL SPAPEAEVEA MRANLPDLDQ 

       130        140        150        160        170        180 
FLGPYPYATL KKWISLTNFI SEATMEKLQP ESRQICAFSD VLPVLFMKHT KDRVGQNLPL 

       190        200        210        220        230        240 
CGTECRSYQE GLARLPEMRP RAGTEIRFSE LPTQMFPAGA TPAEITRHSM DLSYALETVL 

       250        260        270        280        290        300 
SKQFPGNPQD VLGELQFAFV CFLLGNVYEA FEHWKRLLNL LCRSESAMGK YHALYISLIS 

       310        320        330        340        350        360 
ILYHQLGEIP ADFFVDIVSQ DNFLTSTLQV FFSSACSIAV EATLRKKAEK FQAHLTKKFR 

       370        380 
WDFTSEPEDC APVVVELPEG IETA

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Kidney, Mammary gland and Thymus.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6.
[3]Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[4]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Liver.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK018741 mRNA. Translation: BAB31382.1.
AK166203 mRNA. Translation: BAE38626.1.
AK169526 mRNA. Translation: BAE41210.1.
AL929153 Genomic DNA. Translation: CAM26035.1.
CH466551 Genomic DNA. Translation: EDL06199.1.
BC019988 mRNA. Translation: AAH19988.1.
BC020112 mRNA. Translation: AAH20112.1.
IPIIPI00316471.
RefSeqNP_001158290.1. NM_001164818.1.
NP_080937.3. NM_026661.4.
UniGeneMm.253648.

3D structure databases

ProteinModelPortalQ9D2V5.
ModBaseSearch...

PTM databases

PhosphoSiteQ9D2V5.

Proteomic databases

PRIDEQ9D2V5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000029158; ENSMUSP00000029158; ENSMUSG00000027628.
ENSMUST00000109570; ENSMUSP00000105198; ENSMUSG00000027628.
GeneID68295.
KEGGmmu:68295.

Organism-specific databases

MGIMGI:1915545. 0610011L14Rik.

Phylogenomic databases

GeneTreeENSGT00390000007796.
HOGENOMHBG595889.
HOVERGENHBG051148.
InParanoidQ9D2V5.
OrthoDBEOG4WQ12M.
PhylomeDBQ9D2V5.

Gene expression databases

ArrayExpressQ9D2V5.
BgeeQ9D2V5.
CleanExMM_0610011L14RIK.
GenevestigatorQ9D2V5.
GermOnlineENSMUSG00000027628. Mus musculus.

Family and domain databases

InterProIPR007946. AAR2.
[Graphical view]
KOK13205.
PANTHERPTHR12689. AAR2. 1 hit.
PfamPF05282. AAR2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCT004_MOUSE
AccessionPrimary (citable) accession number: Q9D2V5
Secondary accession number(s): Q3TEN8, Q3TM16, Q8VBU9
Entry history
Integrated into UniProtKB/Swiss-Prot: October 19, 2002
Last sequence update: July 27, 2011
Last modified: January 25, 2012
This is version 64 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents