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Protein

Probable tRNA (uracil-O(2)-)-methyltransferase

Gene

Trmt44

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable adenosyl-L-methionine (AdoMet)-dependent tRNA (uracil-O(2)-)-methyltransferase.By similarity

Catalytic activityi

S-adenosyl-L-methionine + uridine(44) in tRNA(Ser) = S-adenosyl-L-homocysteine + 2'-O-methyluridine(44) in tRNA(Ser).

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri669 – 69830C3H1-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Biological processi

tRNA processing

Keywords - Ligandi

Metal-binding, S-adenosyl-L-methionine, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Probable tRNA (uracil-O(2)-)-methyltransferase (EC:2.1.1.211)
Alternative name(s):
Methyltransferase-like protein 19
Gene namesi
Name:Trmt44
Synonyms:Mettl19
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:1926140. Trmt44.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 713713Probable tRNA (uracil-O(2)-)-methyltransferasePRO_0000249895Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei76 – 761PhosphoserineBy similarity
Modified residuei489 – 4891PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ9D2Q2.
MaxQBiQ9D2Q2.
PaxDbiQ9D2Q2.
PeptideAtlasiQ9D2Q2.
PRIDEiQ9D2Q2.

PTM databases

iPTMnetiQ9D2Q2.
PhosphoSiteiQ9D2Q2.

Expressioni

Gene expression databases

BgeeiQ9D2Q2.
CleanExiMM_2310079F23RIK.
ExpressionAtlasiQ9D2Q2. baseline and differential.
GenevisibleiQ9D2Q2. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000030980.

Structurei

3D structure databases

ProteinModelPortaliQ9D2Q2.
SMRiQ9D2Q2. Positions 267-344.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TRM44 family.Curated
Contains 1 C3H1-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri669 – 69830C3H1-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG3790. Eukaryota.
ENOG410YQ45. LUCA.
GeneTreeiENSGT00390000000645.
HOGENOMiHOG000004858.
InParanoidiQ9D2Q2.
KOiK15447.
OMAiMSNVYQI.
OrthoDBiEOG7N37CG.
TreeFamiTF106127.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
InterProiIPR029063. SAM-dependent_MTases.
IPR011671. tRNA_uracil_MeTrfase.
IPR000571. Znf_CCCH.
[Graphical view]
PfamiPF07757. AdoMet_MTase. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.
PROSITEiPS50103. ZF_C3H1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9D2Q2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEELGRVRLS DPDALLPAGF WAAVTVWLER PQVANKRLCG ARMEARGRTL
60 70 80 90 100
RSHAQAECGP RQGQGHGLER EPGQASPKGE PESGPRASRE GTAPAADLNS
110 120 130 140 150
LWDRVSQSLV HANPEMLAFL CGPSLGPQPE AAQELDLILR TVIPKASPHS
160 170 180 190 200
PLTEPKKELV VQDVSSGSVT FLPLEEDNEG NLEVKTSNVY QLHLHHNEGE
210 220 230 240 250
WFISVLIFCP ERWHSDGVVY PKPAWLGEEL LSKLARWAVE NRKSEFKSTL
260 270 280 290 300
SLVSILRYSR MYQELKEKYR DMVKVWPEVT DPEKFVYEDV AIATYLLILW
310 320 330 340 350
EEERAEKGVT TKQSFVDLGC GNGLLVHILS NEGHPGRGID IRRRKIWDMY
360 370 380 390 400
GPQTQLEEGS ITPSDETLFP GVDWLIGNHS DELTPWIPVI AARSSYTCRF
410 420 430 440 450
FVLPCCFFDF VGRYQRQQSR KTQYREYLDF VLEVGLSCGF HVQEDCLRIP
460 470 480 490 500
STKRVCLIGK SRTYPPSAEV WMDEQRTRYL HSRQGHPQSR PGGAHAPSAP
510 520 530 540 550
QTAAHDAGLQ DSCRTVNAGS ECVLEGLAAE RGAGAPAPGL WVPGFCPREK
560 570 580 590 600
AERVRNCAAL PRDFVDQVVL QVANLLLDRK KFNTGNSEAR SLKPWNGGGS
610 620 630 640 650
LSLAEVAAEL NSETLQRLKR ECGGLQTLLK NSHQVFEVLN GRVHIRDWRQ
660 670 680 690 700
ELQRGKPPEA KQNLSAAVFK TRICWFFAHH PDGCVLPAAQ CPFAHGPEEL
710
RLSQTLKKQR QAP
Length:713
Mass (Da):79,836
Last modified:July 27, 2011 - v2
Checksum:iD95B2353192FF449
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti511 – 5111D → Y in BAB31547 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019101 mRNA. Translation: BAB31547.1.
AK132402 mRNA. Translation: BAE21147.1.
CH466524 Genomic DNA. Translation: EDL37486.1.
BC152332 mRNA. Translation: AAI52333.1.
CCDSiCCDS19230.1.
RefSeqiNP_084484.2. NM_030208.3.
UniGeneiMm.98522.

Genome annotation databases

EnsembliENSMUST00000030980; ENSMUSP00000030980; ENSMUSG00000029097.
GeneIDi78890.
KEGGimmu:78890.
UCSCiuc008xdu.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019101 mRNA. Translation: BAB31547.1.
AK132402 mRNA. Translation: BAE21147.1.
CH466524 Genomic DNA. Translation: EDL37486.1.
BC152332 mRNA. Translation: AAI52333.1.
CCDSiCCDS19230.1.
RefSeqiNP_084484.2. NM_030208.3.
UniGeneiMm.98522.

3D structure databases

ProteinModelPortaliQ9D2Q2.
SMRiQ9D2Q2. Positions 267-344.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000030980.

PTM databases

iPTMnetiQ9D2Q2.
PhosphoSiteiQ9D2Q2.

Proteomic databases

EPDiQ9D2Q2.
MaxQBiQ9D2Q2.
PaxDbiQ9D2Q2.
PeptideAtlasiQ9D2Q2.
PRIDEiQ9D2Q2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000030980; ENSMUSP00000030980; ENSMUSG00000029097.
GeneIDi78890.
KEGGimmu:78890.
UCSCiuc008xdu.2. mouse.

Organism-specific databases

CTDi152992.
MGIiMGI:1926140. Trmt44.

Phylogenomic databases

eggNOGiKOG3790. Eukaryota.
ENOG410YQ45. LUCA.
GeneTreeiENSGT00390000000645.
HOGENOMiHOG000004858.
InParanoidiQ9D2Q2.
KOiK15447.
OMAiMSNVYQI.
OrthoDBiEOG7N37CG.
TreeFamiTF106127.

Miscellaneous databases

PROiQ9D2Q2.
SOURCEiSearch...

Gene expression databases

BgeeiQ9D2Q2.
CleanExiMM_2310079F23RIK.
ExpressionAtlasiQ9D2Q2. baseline and differential.
GenevisibleiQ9D2Q2. MM.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
InterProiIPR029063. SAM-dependent_MTases.
IPR011671. tRNA_uracil_MeTrfase.
IPR000571. Znf_CCCH.
[Graphical view]
PfamiPF07757. AdoMet_MTase. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.
PROSITEiPS50103. ZF_C3H1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Liver and Tongue.
  2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiTRM44_MOUSE
AccessioniPrimary (citable) accession number: Q9D2Q2
Secondary accession number(s): A7MCV4, Q3V1K3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: July 27, 2011
Last modified: July 6, 2016
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.