Q9D239 (Q9D239_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL BAB32158.1

Gene names

Name:

B2m MGI 88127

Organism

Mus musculus (Mouse) EMBL BAB32158.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	119 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function

Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system By similarity. SAAS SAAS003597

Ontologies

Keywords
Biological process	Immunity
Cellular component	MHC I SAAS SAAS003597 Secreted SAAS SAAS003597
Domain	Immunoglobulin domain SAAS SAAS003597
Gene Ontology (GO)
Biological_process	T cell differentiation in thymus Inferred from genetic interaction PubMed 18776904. Source: MGI antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent Inferred from mutant phenotype PubMed 16299293. Source: MGI antigen processing and presentation of peptide antigen via MHC class I Inferred from electronic annotation. Source: UniProtKB-KW cellular defense response Traceable author statement PubMed 2685607. Source: MGI immune response Inferred from electronic annotation. Source: InterPro positive regulation of T cell mediated cytotoxicity Inferred from mutant phenotype PubMed 16299293. Source: MGI protein refolding Inferred from direct assay PubMed 16920948. Source: MGI response to molecule of bacterial origin Inferred from mutant phenotype PubMed 16299293. Source: MGI
Cellular_component	MHC class I protein complex Inferred from electronic annotation. Source: UniProtKB-KW external side of plasma membrane Inferred from direct assay PubMed 1538753. Source: MGI extracellular region Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9D239 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: CC16F98679C617FE	FASTA	119	13,794
	10 20 30 40 50 60 MARSVTLVFL VLVTLTGLYA IQKTPQIQVY SRHPPENGKP NILNCYVTQF HPPHIEIQML 70 80 90 100 110 KNGKKIPKVE MSDMSFSKDW SFYILAHTEF TPTETDTYAC RVKHASMAEP ETVYWDRDM

References

[1]	"High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[2]	"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[3]	"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y. Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[4]	Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F. , Imotani K., Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y. Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[5]	"Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[6]	"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[7]	"The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
[8]	"Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAB32158.1. Tissue: Urinary bladder EMBL BAB32158.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK020632 mRNA. Translation: BAB32158.1.
IPI	IPI00331286.
UniGene	Mm.163.
3D structure databases
HSSP	HSSP built from PDB template 1CD1 based on UniProtKB P01887.
ProteinModelPortal	Q9D239.
SMR	Q9D239. Positions 21-119.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
MGI	MGI:88127. B2m.
Phylogenomic databases
HOVERGEN	HBG006197.
InParanoid	Q9D239.
Gene expression databases
Genevestigator	Q9D239.
Family and domain databases
Gene3D	2.60.40.10. 1 hit.
InterPro	IPR015707. B2Microglobulin. IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR003006. Ig/MHC_CS. IPR003597. Ig_C1-set. [Graphical view]
PANTHER	PTHR19944:SF16. PTHR19944:SF16. 1 hit.
Pfam	PF07654. C1-set. 1 hit. [Graphical view]
SMART	SM00407. IGc1. 1 hit. [Graphical view]
PROSITE	PS50835. IG_LIKE. 1 hit. PS00290. IG_MHC. 1 hit. [Graphical view]
ProtoNet	Search...
Other
SOURCE	Search...

Entry information

Entry name

Q9D239_MOUSE

Accession

Primary (citable) accession number: Q9D239

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2001
Last sequence update:	June 1, 2001
Last modified:	April 3, 2013
This is version 95 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)