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Q9D1R9

- RL34_MOUSE

UniProt

Q9D1R9 - RL34_MOUSE

Protein

60S ribosomal protein L34

Gene

Rpl34

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L34
    Gene namesi
    Name:Rpl34
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 3

    Organism-specific databases

    MGIiMGI:1915686. Rpl34.

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 11711660S ribosomal protein L34PRO_0000131832Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei12 – 121PhosphoserineBy similarity
    Modified residuei36 – 361N6-acetyllysineBy similarity
    Modified residuei43 – 431N6-acetyllysine1 Publication

    Keywords - PTMi

    Acetylation, Phosphoprotein

    Proteomic databases

    MaxQBiQ9D1R9.
    PaxDbiQ9D1R9.
    PRIDEiQ9D1R9.

    PTM databases

    PhosphoSiteiQ9D1R9.

    Expressioni

    Gene expression databases

    BgeeiQ9D1R9.
    GenevestigatoriQ9D1R9.

    Interactioni

    Protein-protein interaction databases

    BioGridi212853. 8 interactions.
    546909. 8 interactions.
    787025. 8 interactions.
    IntActiQ9D1R9. 2 interactions.
    MINTiMINT-1857602.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9D1R9.
    SMRiQ9D1R9. Positions 2-115.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L34e family.Curated

    Phylogenomic databases

    eggNOGiCOG2174.
    GeneTreeiENSGT00390000008294.
    HOGENOMiHOG000216922.
    HOVERGENiHBG024280.
    InParanoidiQ497V4.
    KOiK02915.
    OMAiRCGDCVK.
    OrthoDBiEOG7QC7Z7.
    PhylomeDBiQ9D1R9.
    TreeFamiTF314326.

    Family and domain databases

    InterProiIPR008195. Ribosomal_L34Ae.
    IPR018065. Ribosomal_L34e_CS.
    [Graphical view]
    PANTHERiPTHR10759. PTHR10759. 1 hit.
    PfamiPF01199. Ribosomal_L34e. 1 hit.
    [Graphical view]
    PRINTSiPR01250. RIBOSOMALL34.
    PROSITEiPS01145. RIBOSOMAL_L34E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9D1R9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVQRLTYRRR LSYNTASNKT RLSRTPGNRI VYLYTKKVGK APKSACGVCP    50
    GRLRGVRAVR PKVLMRLSKT QKHVSRAYGG SMCAKCVRDR IKRAFLIEEQ 100
    KIVVKVLKAQ AQSQKAK 117
    Length:117
    Mass (Da):13,293
    Last modified:January 23, 2007 - v2
    Checksum:i6775B00B98CB6A30
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK003177 mRNA. Translation: BAB22621.1.
    AK146252 mRNA. Translation: BAE27014.1.
    CH466532 Genomic DNA. Translation: EDL12210.1.
    CH466532 Genomic DNA. Translation: EDL12212.1.
    BC028517 mRNA. Translation: AAH28517.1.
    BC058118 mRNA. Translation: AAH58118.1.
    BC100360 mRNA. Translation: AAI00361.1.
    CCDSiCCDS17841.1.
    RefSeqiNP_001005859.1. NM_001005859.3.
    NP_001186279.1. NM_001199350.1.
    NP_001274510.1. NM_001287581.1.
    NP_081000.1. NM_026724.2.
    XP_001481222.1. XM_001481172.4.
    UniGeneiMm.140568.
    Mm.391636.

    Genome annotation databases

    EnsembliENSMUST00000062601; ENSMUSP00000086614; ENSMUSG00000062006.
    ENSMUST00000079085; ENSMUSP00000078092; ENSMUSG00000062006.
    GeneIDi100043876.
    619547.
    68436.
    KEGGimmu:100043876.
    mmu:619547.
    mmu:68436.
    UCSCiuc008rjd.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK003177 mRNA. Translation: BAB22621.1 .
    AK146252 mRNA. Translation: BAE27014.1 .
    CH466532 Genomic DNA. Translation: EDL12210.1 .
    CH466532 Genomic DNA. Translation: EDL12212.1 .
    BC028517 mRNA. Translation: AAH28517.1 .
    BC058118 mRNA. Translation: AAH58118.1 .
    BC100360 mRNA. Translation: AAI00361.1 .
    CCDSi CCDS17841.1.
    RefSeqi NP_001005859.1. NM_001005859.3.
    NP_001186279.1. NM_001199350.1.
    NP_001274510.1. NM_001287581.1.
    NP_081000.1. NM_026724.2.
    XP_001481222.1. XM_001481172.4.
    UniGenei Mm.140568.
    Mm.391636.

    3D structure databases

    ProteinModelPortali Q9D1R9.
    SMRi Q9D1R9. Positions 2-115.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 212853. 8 interactions.
    546909. 8 interactions.
    787025. 8 interactions.
    IntActi Q9D1R9. 2 interactions.
    MINTi MINT-1857602.

    PTM databases

    PhosphoSitei Q9D1R9.

    Proteomic databases

    MaxQBi Q9D1R9.
    PaxDbi Q9D1R9.
    PRIDEi Q9D1R9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000062601 ; ENSMUSP00000086614 ; ENSMUSG00000062006 .
    ENSMUST00000079085 ; ENSMUSP00000078092 ; ENSMUSG00000062006 .
    GeneIDi 100043876.
    619547.
    68436.
    KEGGi mmu:100043876.
    mmu:619547.
    mmu:68436.
    UCSCi uc008rjd.1. mouse.

    Organism-specific databases

    CTDi 6164.
    619547.
    MGIi MGI:1915686. Rpl34.

    Phylogenomic databases

    eggNOGi COG2174.
    GeneTreei ENSGT00390000008294.
    HOGENOMi HOG000216922.
    HOVERGENi HBG024280.
    InParanoidi Q497V4.
    KOi K02915.
    OMAi RCGDCVK.
    OrthoDBi EOG7QC7Z7.
    PhylomeDBi Q9D1R9.
    TreeFami TF314326.

    Miscellaneous databases

    NextBioi 327176.
    PROi Q9D1R9.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q9D1R9.
    Genevestigatori Q9D1R9.

    Family and domain databases

    InterProi IPR008195. Ribosomal_L34Ae.
    IPR018065. Ribosomal_L34e_CS.
    [Graphical view ]
    PANTHERi PTHR10759. PTHR10759. 1 hit.
    Pfami PF01199. Ribosomal_L34e. 1 hit.
    [Graphical view ]
    PRINTSi PR01250. RIBOSOMALL34.
    PROSITEi PS01145. RIBOSOMAL_L34E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: BALB/c and C57BL/6J.
      Tissue: Embryo.
    2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6.
      Tissue: Brain, Mammary gland and Thyroid.
    4. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
      Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
      Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-43, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Embryonic fibroblast.

    Entry informationi

    Entry nameiRL34_MOUSE
    AccessioniPrimary (citable) accession number: Q9D1R9
    Secondary accession number(s): Q497V4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 27, 2001
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 97 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3