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Protein

Uncharacterized protein CXorf40 homolog

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein CXorf40 homolog
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:1915868. 1110012L19Rik.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 157157Uncharacterized protein CXorf40 homologPRO_0000079734Add
BLAST

Proteomic databases

MaxQBiQ9D1F3.
PaxDbiQ9D1F3.
PRIDEiQ9D1F3.

Expressioni

Gene expression databases

BgeeiQ9D1F3.
CleanExiMM_1110012L19RIK.
GenevestigatoriQ9D1F3.

Structurei

3D structure databases

ProteinModelPortaliQ9D1F3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG45203.
GeneTreeiENSGT00390000012182.
HOGENOMiHOG000231371.
HOVERGENiHBG054454.
InParanoidiQ9D1F3.
OMAiVSNPRWL.
OrthoDBiEOG78PVBR.
PhylomeDBiQ9D1F3.
TreeFamiTF332845.

Family and domain databases

InterProiIPR007374. ASCH_domain.
IPR015947. PUA-like_domain.
[Graphical view]
PfamiPF04266. ASCH. 1 hit.
[Graphical view]
SMARTiSM01022. ASCH. 1 hit.
[Graphical view]
SUPFAMiSSF88697. SSF88697. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9D1F3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKFPCLSFRQ PYAGLILNGV KTLETRWRPL LSSVQKYTIA IHIAHKDWED
60 70 80 90 100
DEWQEVLMER LGMTWTQIQT LLQAGEKYGR GVIAGLIDIG ETFQCPETLT
110 120 130 140 150
AEEAVELETQ AVLTNLQLKY LTQVSNPRWL LEPIPRKGGK DIFQVDIPEH

LIPLEKE
Length:157
Mass (Da):18,059
Last modified:June 1, 2001 - v1
Checksum:iC0C7D33EA4468DB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK003642 mRNA. Translation: BAB22908.1.
AL672026 Genomic DNA. Translation: CAM23461.1.
BC024574 mRNA. Translation: AAH24574.1.
CCDSiCCDS30174.1.
RefSeqiNP_081063.1. NM_026787.2.
UniGeneiMm.293255.

Genome annotation databases

EnsembliENSMUST00000053981; ENSMUSP00000052765; ENSMUSG00000045237.
GeneIDi68618.
KEGGimmu:68618.
UCSCiuc009tjf.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK003642 mRNA. Translation: BAB22908.1.
AL672026 Genomic DNA. Translation: CAM23461.1.
BC024574 mRNA. Translation: AAH24574.1.
CCDSiCCDS30174.1.
RefSeqiNP_081063.1. NM_026787.2.
UniGeneiMm.293255.

3D structure databases

ProteinModelPortaliQ9D1F3.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiQ9D1F3.
PaxDbiQ9D1F3.
PRIDEiQ9D1F3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000053981; ENSMUSP00000052765; ENSMUSG00000045237.
GeneIDi68618.
KEGGimmu:68618.
UCSCiuc009tjf.1. mouse.

Organism-specific databases

MGIiMGI:1915868. 1110012L19Rik.

Phylogenomic databases

eggNOGiNOG45203.
GeneTreeiENSGT00390000012182.
HOGENOMiHOG000231371.
HOVERGENiHBG054454.
InParanoidiQ9D1F3.
OMAiVSNPRWL.
OrthoDBiEOG78PVBR.
PhylomeDBiQ9D1F3.
TreeFamiTF332845.

Miscellaneous databases

NextBioi327572.

Gene expression databases

BgeeiQ9D1F3.
CleanExiMM_1110012L19RIK.
GenevestigatoriQ9D1F3.

Family and domain databases

InterProiIPR007374. ASCH_domain.
IPR015947. PUA-like_domain.
[Graphical view]
PfamiPF04266. ASCH. 1 hit.
[Graphical view]
SMARTiSM01022. ASCH. 1 hit.
[Graphical view]
SUPFAMiSSF88697. SSF88697. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Kidney.

Entry informationi

Entry nameiCX040_MOUSE
AccessioniPrimary (citable) accession number: Q9D1F3
Secondary accession number(s): A2AF50
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 21, 2005
Last sequence update: June 1, 2001
Last modified: January 7, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.