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Q9D1E7 (Q9D1E7_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Serpinb3c MGI 1277952
OrganismMus musculus (Mouse) EMBL BAB22916.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length386 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the serpin family. RuleBase RU000411

Sequences

Sequence LengthMass (Da)Tools
Q9D1E7 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 2A3CFA78A73AD004

FASTA38644,314
        10         20         30         40         50         60 
MILFPEADGK FTVEMYRQLR ESDKNIFYSP ISMITALGML KLGAKGNTEI QIEKVLQCNE 

        70         80         90        100        110        120 
TTEKTTEKSA HCDDEDNVHE QFQKLITQLN KSNDDYDLKA ANSIYGAKGF PLLQTFLEDI 

       130        140        150        160        170        180 
KEYYHANVES LDFEHAAEES EKKINFSVKN ETNGKIKDLF PSGSLSSSTK LVLVNAVYFK 

       190        200        210        220        230        240 
GRWNHKFDEN NTIEEMFWLN KNTSIPVPMM KQRNKFMFSF LEDVQAQIVE IPYKGKELSM 

       250        260        270        280        290        300 
FVLRPMEIDG LKQLEKQLTA AKLLEWTRAE NMHLTELYLW LPRFKVEEKY DLPVPLECMG 

       310        320        330        340        350        360 
MVNAFDPQKA DFSGMSSTQG LVVSKVLHKS FVEVNEEGTE ADPASGEEVI LRLAQVADFR 

       370        380 
CDHPFLFFII HSKTNSILFF GRISSP 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[4]Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F. expand/collapse author list , Imotani K., Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[5]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22916.1.
Tissue: Whole body EMBL BAB22916.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK003650 mRNA. Translation: BAB22916.1.
RefSeqNP_958751.2. NM_201363.2.
UniGeneMm.337362.

3D structure databases

ProteinModelPortalQ9D1E7.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

MEROPSI04.960.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID381286.
KEGGmmu:381286.

Organism-specific databases

CTD381286.
MGIMGI:1277952. Serpinb3c.

Phylogenomic databases

HOVERGENHBG005957.
InParanoidQ9D1E7.
KOK13963.

Gene expression databases

GenevestigatorQ9D1E7.

Family and domain databases

InterProIPR023795. Serpin_CS.
IPR023796. Serpin_dom.
IPR000215. Serpin_fam.
[Graphical view]
PANTHERPTHR11461. PTHR11461. 1 hit.
PfamPF00079. Serpin. 1 hit.
[Graphical view]
SMARTSM00093. SERPIN. 1 hit.
[Graphical view]
SUPFAMSSF56574. SSF56574. 1 hit.
PROSITEPS00284. SERPIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio401834.
SOURCESearch...

Entry information

Entry nameQ9D1E7_MOUSE
AccessionPrimary (citable) accession number: Q9D1E7
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: June 11, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)