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Q9D1C9

- RRP7A_MOUSE

UniProt

Q9D1C9 - RRP7A_MOUSE

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Protein

Ribosomal RNA-processing protein 7 homolog A

Gene

Rrp7a

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. poly(A) RNA binding Source: Ensembl
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA-processing protein 7 homolog A
Alternative name(s):
Gastric cancer antigen Zg14 homolog
Gene namesi
Name:Rrp7a
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 15

Organism-specific databases

MGIiMGI:1922028. Rrp7a.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 280280Ribosomal RNA-processing protein 7 homolog APRO_0000082009Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei99 – 991PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9D1C9.
PaxDbiQ9D1C9.
PRIDEiQ9D1C9.

PTM databases

PhosphoSiteiQ9D1C9.

Expressioni

Gene expression databases

BgeeiQ9D1C9.
ExpressionAtlasiQ9D1C9. baseline and differential.
GenevestigatoriQ9D1C9.

Interactioni

Protein-protein interaction databases

BioGridi217014. 1 interaction.
IntActiQ9D1C9. 1 interaction.
MINTiMINT-4126548.

Structurei

3D structure databases

ProteinModelPortaliQ9D1C9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini61 – 9030RRMAdd
BLAST

Sequence similaritiesi

Belongs to the RRP7 family.Curated

Phylogenomic databases

eggNOGiNOG283081.
GeneTreeiENSGT00390000018482.
HOGENOMiHOG000007041.
HOVERGENiHBG054483.
InParanoidiQ9D1C9.
KOiK14545.
OMAiWEEDKAK.
OrthoDBiEOG71VSTK.
PhylomeDBiQ9D1C9.
TreeFamiTF313949.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR024326. RRP7.
[Graphical view]
PANTHERiPTHR13191. PTHR13191. 1 hit.
PfamiPF12923. RRP7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9D1C9 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVSRRKKRKA GGHEESIPSP PGYSAVPVKF SAKQQAPHYL YMRQHRVRQG
60 70 80 90 100
TQSTWPPDRT LFILNVPPYC TQESLSRCLS CCGTIKTVEL QEKPDLAESP
110 120 130 140 150
TEPKSQFFHP KPVPGFQVAY VVFQKPSGVS AALNLKGPLL VSTESHLVKS
160 170 180 190 200
GIHKWISDYE DSVLDPEALR MEVDAFMEAY DKKIAEEEAK AKEEEGVPDE
210 220 230 240 250
EGWVKVTRRG RRPVLPRTEA ASLRVLEKEK RKRARKELLN FYAWQHRETK
260 270 280
MEHLAQLRKK FEEDKQRIEL MRAQRKFRPY
Length:280
Mass (Da):32,399
Last modified:June 1, 2001 - v1
Checksum:i4F2D324221B2AA3F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti103 – 1031P → Q in BAC27942. (PubMed:16141072)Curated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK003698 mRNA. Translation: BAB22944.1.
AK032596 mRNA. Translation: BAC27942.1.
AK036247 mRNA. Translation: BAC29360.1.
AK088456 mRNA. Translation: BAC40363.1.
AK146821 mRNA. Translation: BAE27459.1.
AK159553 mRNA. Translation: BAE35178.1.
AK168189 mRNA. Translation: BAE40149.1.
AK168850 mRNA. Translation: BAE40672.1.
BC012523 mRNA. Translation: AAH12523.1.
CCDSiCCDS27696.1.
RefSeqiNP_083377.3. NM_029101.4.
UniGeneiMm.30056.
Mm.452636.

Genome annotation databases

EnsembliENSMUST00000018184; ENSMUSP00000018184; ENSMUSG00000018040.
GeneIDi74778.
KEGGimmu:74778.
UCSCiuc007wzy.3. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK003698 mRNA. Translation: BAB22944.1 .
AK032596 mRNA. Translation: BAC27942.1 .
AK036247 mRNA. Translation: BAC29360.1 .
AK088456 mRNA. Translation: BAC40363.1 .
AK146821 mRNA. Translation: BAE27459.1 .
AK159553 mRNA. Translation: BAE35178.1 .
AK168189 mRNA. Translation: BAE40149.1 .
AK168850 mRNA. Translation: BAE40672.1 .
BC012523 mRNA. Translation: AAH12523.1 .
CCDSi CCDS27696.1.
RefSeqi NP_083377.3. NM_029101.4.
UniGenei Mm.30056.
Mm.452636.

3D structure databases

ProteinModelPortali Q9D1C9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 217014. 1 interaction.
IntActi Q9D1C9. 1 interaction.
MINTi MINT-4126548.

PTM databases

PhosphoSitei Q9D1C9.

Proteomic databases

MaxQBi Q9D1C9.
PaxDbi Q9D1C9.
PRIDEi Q9D1C9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000018184 ; ENSMUSP00000018184 ; ENSMUSG00000018040 .
GeneIDi 74778.
KEGGi mmu:74778.
UCSCi uc007wzy.3. mouse.

Organism-specific databases

CTDi 27341.
MGIi MGI:1922028. Rrp7a.

Phylogenomic databases

eggNOGi NOG283081.
GeneTreei ENSGT00390000018482.
HOGENOMi HOG000007041.
HOVERGENi HBG054483.
InParanoidi Q9D1C9.
KOi K14545.
OMAi WEEDKAK.
OrthoDBi EOG71VSTK.
PhylomeDBi Q9D1C9.
TreeFami TF313949.

Miscellaneous databases

NextBioi 341622.
PROi Q9D1C9.
SOURCEi Search...

Gene expression databases

Bgeei Q9D1C9.
ExpressionAtlasi Q9D1C9. baseline and differential.
Genevestigatori Q9D1C9.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR024326. RRP7.
[Graphical view ]
PANTHERi PTHR13191. PTHR13191. 1 hit.
Pfami PF12923. RRP7. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J, DBA/2 and NOD.
    Tissue: Amnion, Cerebellum, Heart, Olfactory bulb and Thymus.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Mammary tumor.

Entry informationi

Entry nameiRRP7A_MOUSE
AccessioniPrimary (citable) accession number: Q9D1C9
Secondary accession number(s): Q3TWT8, Q8CCK8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 24, 2005
Last sequence update: June 1, 2001
Last modified: October 29, 2014
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3