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Q9D1C9 (RRP7A_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 95. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosomal RNA-processing protein 7 homolog A
Alternative name(s):
Gastric cancer antigen Zg14 homolog
Gene names
Name:Rrp7a
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the RRP7 family.

Contains 1 RRM (RNA recognition motif) domain.

Ontologies

Keywords
   LigandRNA-binding
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

nucleotide binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 280280Ribosomal RNA-processing protein 7 homolog A
PRO_0000082009

Regions

Domain61 – 9030RRM

Amino acid modifications

Modified residue991Phosphoserine By similarity

Experimental info

Sequence conflict1031P → Q in BAC27942. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q9D1C9 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 4F2D324221B2AA3F

FASTA28032,399
        10         20         30         40         50         60 
MVSRRKKRKA GGHEESIPSP PGYSAVPVKF SAKQQAPHYL YMRQHRVRQG TQSTWPPDRT 

        70         80         90        100        110        120 
LFILNVPPYC TQESLSRCLS CCGTIKTVEL QEKPDLAESP TEPKSQFFHP KPVPGFQVAY 

       130        140        150        160        170        180 
VVFQKPSGVS AALNLKGPLL VSTESHLVKS GIHKWISDYE DSVLDPEALR MEVDAFMEAY 

       190        200        210        220        230        240 
DKKIAEEEAK AKEEEGVPDE EGWVKVTRRG RRPVLPRTEA ASLRVLEKEK RKRARKELLN 

       250        260        270        280 
FYAWQHRETK MEHLAQLRKK FEEDKQRIEL MRAQRKFRPY 

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J, DBA/2 and NOD.
Tissue: Amnion, Cerebellum, Heart, Olfactory bulb and Thymus.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N.
Tissue: Mammary tumor.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK003698 mRNA. Translation: BAB22944.1.
AK032596 mRNA. Translation: BAC27942.1.
AK036247 mRNA. Translation: BAC29360.1.
AK088456 mRNA. Translation: BAC40363.1.
AK146821 mRNA. Translation: BAE27459.1.
AK159553 mRNA. Translation: BAE35178.1.
AK168189 mRNA. Translation: BAE40149.1.
AK168850 mRNA. Translation: BAE40672.1.
BC012523 mRNA. Translation: AAH12523.1.
CCDSCCDS27696.1.
RefSeqNP_083377.3. NM_029101.4.
UniGeneMm.30056.
Mm.452636.

3D structure databases

ProteinModelPortalQ9D1C9.
SMRQ9D1C9. Positions 56-139, 237-280.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid217014. 1 interaction.
IntActQ9D1C9. 1 interaction.
MINTMINT-4126548.

PTM databases

PhosphoSiteQ9D1C9.

Proteomic databases

MaxQBQ9D1C9.
PaxDbQ9D1C9.
PRIDEQ9D1C9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000018184; ENSMUSP00000018184; ENSMUSG00000018040.
GeneID74778.
KEGGmmu:74778.
UCSCuc007wzy.3. mouse.

Organism-specific databases

CTD27341.
MGIMGI:1922028. Rrp7a.

Phylogenomic databases

eggNOGNOG283081.
GeneTreeENSGT00390000018482.
HOGENOMHOG000007041.
HOVERGENHBG054483.
InParanoidQ9D1C9.
KOK14545.
OMAWEEDKAK.
OrthoDBEOG71VSTK.
PhylomeDBQ9D1C9.
TreeFamTF313949.

Gene expression databases

BgeeQ9D1C9.
GenevestigatorQ9D1C9.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR024326. RRP7.
[Graphical view]
PANTHERPTHR13191. PTHR13191. 1 hit.
PfamPF12923. RRP7. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio341622.
PROQ9D1C9.
SOURCESearch...

Entry information

Entry nameRRP7A_MOUSE
AccessionPrimary (citable) accession number: Q9D1C9
Secondary accession number(s): Q3TWT8, Q8CCK8
Entry history
Integrated into UniProtKB/Swiss-Prot: May 24, 2005
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot