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Q9D1C9

- RRP7A_MOUSE

UniProt

Q9D1C9 - RRP7A_MOUSE

Protein

Ribosomal RNA-processing protein 7 homolog A

Gene

Rrp7a

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 96 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. RNA binding Source: UniProtKB-KW

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosomal RNA-processing protein 7 homolog A
    Alternative name(s):
    Gastric cancer antigen Zg14 homolog
    Gene namesi
    Name:Rrp7a
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 15

    Organism-specific databases

    MGIiMGI:1922028. Rrp7a.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 280280Ribosomal RNA-processing protein 7 homolog APRO_0000082009Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei99 – 991PhosphoserineBy similarity

    Keywords - PTMi

    Phosphoprotein

    Proteomic databases

    MaxQBiQ9D1C9.
    PaxDbiQ9D1C9.
    PRIDEiQ9D1C9.

    PTM databases

    PhosphoSiteiQ9D1C9.

    Expressioni

    Gene expression databases

    BgeeiQ9D1C9.
    GenevestigatoriQ9D1C9.

    Interactioni

    Protein-protein interaction databases

    BioGridi217014. 1 interaction.
    IntActiQ9D1C9. 1 interaction.
    MINTiMINT-4126548.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9D1C9.
    SMRiQ9D1C9. Positions 56-139, 237-280.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini61 – 9030RRMAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RRP7 family.Curated

    Phylogenomic databases

    eggNOGiNOG283081.
    GeneTreeiENSGT00390000018482.
    HOGENOMiHOG000007041.
    HOVERGENiHBG054483.
    InParanoidiQ9D1C9.
    KOiK14545.
    OMAiWEEDKAK.
    OrthoDBiEOG71VSTK.
    PhylomeDBiQ9D1C9.
    TreeFamiTF313949.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR024326. RRP7.
    [Graphical view]
    PANTHERiPTHR13191. PTHR13191. 1 hit.
    PfamiPF12923. RRP7. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9D1C9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVSRRKKRKA GGHEESIPSP PGYSAVPVKF SAKQQAPHYL YMRQHRVRQG    50
    TQSTWPPDRT LFILNVPPYC TQESLSRCLS CCGTIKTVEL QEKPDLAESP 100
    TEPKSQFFHP KPVPGFQVAY VVFQKPSGVS AALNLKGPLL VSTESHLVKS 150
    GIHKWISDYE DSVLDPEALR MEVDAFMEAY DKKIAEEEAK AKEEEGVPDE 200
    EGWVKVTRRG RRPVLPRTEA ASLRVLEKEK RKRARKELLN FYAWQHRETK 250
    MEHLAQLRKK FEEDKQRIEL MRAQRKFRPY 280
    Length:280
    Mass (Da):32,399
    Last modified:June 1, 2001 - v1
    Checksum:i4F2D324221B2AA3F
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti103 – 1031P → Q in BAC27942. (PubMed:16141072)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK003698 mRNA. Translation: BAB22944.1.
    AK032596 mRNA. Translation: BAC27942.1.
    AK036247 mRNA. Translation: BAC29360.1.
    AK088456 mRNA. Translation: BAC40363.1.
    AK146821 mRNA. Translation: BAE27459.1.
    AK159553 mRNA. Translation: BAE35178.1.
    AK168189 mRNA. Translation: BAE40149.1.
    AK168850 mRNA. Translation: BAE40672.1.
    BC012523 mRNA. Translation: AAH12523.1.
    CCDSiCCDS27696.1.
    RefSeqiNP_083377.3. NM_029101.4.
    UniGeneiMm.30056.
    Mm.452636.

    Genome annotation databases

    EnsembliENSMUST00000018184; ENSMUSP00000018184; ENSMUSG00000018040.
    GeneIDi74778.
    KEGGimmu:74778.
    UCSCiuc007wzy.3. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK003698 mRNA. Translation: BAB22944.1 .
    AK032596 mRNA. Translation: BAC27942.1 .
    AK036247 mRNA. Translation: BAC29360.1 .
    AK088456 mRNA. Translation: BAC40363.1 .
    AK146821 mRNA. Translation: BAE27459.1 .
    AK159553 mRNA. Translation: BAE35178.1 .
    AK168189 mRNA. Translation: BAE40149.1 .
    AK168850 mRNA. Translation: BAE40672.1 .
    BC012523 mRNA. Translation: AAH12523.1 .
    CCDSi CCDS27696.1.
    RefSeqi NP_083377.3. NM_029101.4.
    UniGenei Mm.30056.
    Mm.452636.

    3D structure databases

    ProteinModelPortali Q9D1C9.
    SMRi Q9D1C9. Positions 56-139, 237-280.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 217014. 1 interaction.
    IntActi Q9D1C9. 1 interaction.
    MINTi MINT-4126548.

    PTM databases

    PhosphoSitei Q9D1C9.

    Proteomic databases

    MaxQBi Q9D1C9.
    PaxDbi Q9D1C9.
    PRIDEi Q9D1C9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000018184 ; ENSMUSP00000018184 ; ENSMUSG00000018040 .
    GeneIDi 74778.
    KEGGi mmu:74778.
    UCSCi uc007wzy.3. mouse.

    Organism-specific databases

    CTDi 27341.
    MGIi MGI:1922028. Rrp7a.

    Phylogenomic databases

    eggNOGi NOG283081.
    GeneTreei ENSGT00390000018482.
    HOGENOMi HOG000007041.
    HOVERGENi HBG054483.
    InParanoidi Q9D1C9.
    KOi K14545.
    OMAi WEEDKAK.
    OrthoDBi EOG71VSTK.
    PhylomeDBi Q9D1C9.
    TreeFami TF313949.

    Miscellaneous databases

    NextBioi 341622.
    PROi Q9D1C9.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q9D1C9.
    Genevestigatori Q9D1C9.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR024326. RRP7.
    [Graphical view ]
    PANTHERi PTHR13191. PTHR13191. 1 hit.
    Pfami PF12923. RRP7. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J, DBA/2 and NOD.
      Tissue: Amnion, Cerebellum, Heart, Olfactory bulb and Thymus.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: FVB/N.
      Tissue: Mammary tumor.

    Entry informationi

    Entry nameiRRP7A_MOUSE
    AccessioniPrimary (citable) accession number: Q9D1C9
    Secondary accession number(s): Q3TWT8, Q8CCK8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 24, 2005
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 96 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3