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Protein

Ribosomal RNA-processing protein 7 homolog A

Gene

Rrp7a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • blastocyst formation Source: MGI
  • ribosomal small subunit assembly Source: GO_Central
  • rRNA processing Source: GO_Central
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA-processing protein 7 homolog A
Alternative name(s):
Gastric cancer antigen Zg14 homolog
Gene namesi
Name:Rrp7a
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 15

Organism-specific databases

MGIiMGI:1922028. Rrp7a.

Subcellular locationi

GO - Cellular componenti

  • CURI complex Source: GO_Central
  • cytoplasm Source: MGI
  • UTP-C complex Source: GO_Central
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 280280Ribosomal RNA-processing protein 7 homolog APRO_0000082009Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei99 – 991PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9D1C9.
PaxDbiQ9D1C9.
PRIDEiQ9D1C9.

PTM databases

PhosphoSiteiQ9D1C9.

Expressioni

Gene expression databases

BgeeiQ9D1C9.
ExpressionAtlasiQ9D1C9. baseline and differential.
GenevisibleiQ9D1C9. MM.

Interactioni

Protein-protein interaction databases

BioGridi217014. 1 interaction.
IntActiQ9D1C9. 1 interaction.
MINTiMINT-4126548.
STRINGi10090.ENSMUSP00000018184.

Structurei

3D structure databases

ProteinModelPortaliQ9D1C9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini61 – 9030RRMAdd
BLAST

Sequence similaritiesi

Belongs to the RRP7 family.Curated

Phylogenomic databases

eggNOGiNOG283081.
GeneTreeiENSGT00390000018482.
HOGENOMiHOG000007041.
HOVERGENiHBG054483.
InParanoidiQ9D1C9.
KOiK14545.
OMAiSRRFKPY.
OrthoDBiEOG71VSTK.
PhylomeDBiQ9D1C9.
TreeFamiTF313949.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR024326. RRP7.
[Graphical view]
PANTHERiPTHR13191. PTHR13191. 1 hit.
PfamiPF12923. RRP7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9D1C9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSRRKKRKA GGHEESIPSP PGYSAVPVKF SAKQQAPHYL YMRQHRVRQG
60 70 80 90 100
TQSTWPPDRT LFILNVPPYC TQESLSRCLS CCGTIKTVEL QEKPDLAESP
110 120 130 140 150
TEPKSQFFHP KPVPGFQVAY VVFQKPSGVS AALNLKGPLL VSTESHLVKS
160 170 180 190 200
GIHKWISDYE DSVLDPEALR MEVDAFMEAY DKKIAEEEAK AKEEEGVPDE
210 220 230 240 250
EGWVKVTRRG RRPVLPRTEA ASLRVLEKEK RKRARKELLN FYAWQHRETK
260 270 280
MEHLAQLRKK FEEDKQRIEL MRAQRKFRPY
Length:280
Mass (Da):32,399
Last modified:June 1, 2001 - v1
Checksum:i4F2D324221B2AA3F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti103 – 1031P → Q in BAC27942 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK003698 mRNA. Translation: BAB22944.1.
AK032596 mRNA. Translation: BAC27942.1.
AK036247 mRNA. Translation: BAC29360.1.
AK088456 mRNA. Translation: BAC40363.1.
AK146821 mRNA. Translation: BAE27459.1.
AK159553 mRNA. Translation: BAE35178.1.
AK168189 mRNA. Translation: BAE40149.1.
AK168850 mRNA. Translation: BAE40672.1.
BC012523 mRNA. Translation: AAH12523.1.
CCDSiCCDS27696.1.
RefSeqiNP_083377.3. NM_029101.4.
UniGeneiMm.30056.
Mm.452636.

Genome annotation databases

EnsembliENSMUST00000018184; ENSMUSP00000018184; ENSMUSG00000018040.
GeneIDi74778.
KEGGimmu:74778.
UCSCiuc007wzy.3. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK003698 mRNA. Translation: BAB22944.1.
AK032596 mRNA. Translation: BAC27942.1.
AK036247 mRNA. Translation: BAC29360.1.
AK088456 mRNA. Translation: BAC40363.1.
AK146821 mRNA. Translation: BAE27459.1.
AK159553 mRNA. Translation: BAE35178.1.
AK168189 mRNA. Translation: BAE40149.1.
AK168850 mRNA. Translation: BAE40672.1.
BC012523 mRNA. Translation: AAH12523.1.
CCDSiCCDS27696.1.
RefSeqiNP_083377.3. NM_029101.4.
UniGeneiMm.30056.
Mm.452636.

3D structure databases

ProteinModelPortaliQ9D1C9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi217014. 1 interaction.
IntActiQ9D1C9. 1 interaction.
MINTiMINT-4126548.
STRINGi10090.ENSMUSP00000018184.

PTM databases

PhosphoSiteiQ9D1C9.

Proteomic databases

MaxQBiQ9D1C9.
PaxDbiQ9D1C9.
PRIDEiQ9D1C9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000018184; ENSMUSP00000018184; ENSMUSG00000018040.
GeneIDi74778.
KEGGimmu:74778.
UCSCiuc007wzy.3. mouse.

Organism-specific databases

CTDi27341.
MGIiMGI:1922028. Rrp7a.

Phylogenomic databases

eggNOGiNOG283081.
GeneTreeiENSGT00390000018482.
HOGENOMiHOG000007041.
HOVERGENiHBG054483.
InParanoidiQ9D1C9.
KOiK14545.
OMAiSRRFKPY.
OrthoDBiEOG71VSTK.
PhylomeDBiQ9D1C9.
TreeFamiTF313949.

Miscellaneous databases

NextBioi341622.
PROiQ9D1C9.
SOURCEiSearch...

Gene expression databases

BgeeiQ9D1C9.
ExpressionAtlasiQ9D1C9. baseline and differential.
GenevisibleiQ9D1C9. MM.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR024326. RRP7.
[Graphical view]
PANTHERiPTHR13191. PTHR13191. 1 hit.
PfamiPF12923. RRP7. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J, DBA/2 and NOD.
    Tissue: Amnion, Cerebellum, Heart, Olfactory bulb and Thymus.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Mammary tumor.

Entry informationi

Entry nameiRRP7A_MOUSE
AccessioniPrimary (citable) accession number: Q9D1C9
Secondary accession number(s): Q3TWT8, Q8CCK8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 24, 2005
Last sequence update: June 1, 2001
Last modified: June 24, 2015
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.