Reviewed, UniProtKB/Swiss-Prot Q9D1A0 (CI021_MOUSE)

Names and origin

Protein names	Recommended name:     UPF0308 protein C9orf21 homolog
Organism	Mus musculus (Mouse)
Taxonomic identifier	10090 [NCBI]
Taxonomic lineage	Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus

Protein attributes

Sequence length	226 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the UPF0308 family.

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 226	226	UPF0308 protein C9orf21 homolog		PRO_0000221625

Sequences

	Sequence		Length	Mass (Da)
	Q9D1A0-1 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: 9E256CFDEB76FB99	FASTA	226	24,904
	10 20 30 40 50 60 MAAPVTRQVS GCAGRVPSPA GSVTERGQPL AAAVAELPVL DASGRRVTFG ALFRERRAVV 70 80 90 100 110 120 VFVRHFLCYV CKEYVEDLAK IPKSVLREAD VTLIVIGQSS YHHIEPFCKL TGYSHEIYVD 130 140 150 160 170 180 PEREIYKRLG MKRGEEISSS GQSPHIKSNL LSGSLQSLWR AVTGPLFDFQ GDPAQQGGTL 190 200 210 220 ILGPGNNIHF VHRDRNRLDH KPINSVLQLV GVQPVNFMSR PTVIHV

References

[1]

"The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y. Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: C57BL/6J. Tissue: Embryo.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AK003782 mRNA. Translation: BAB22993.1. AK006589 mRNA. Translation: BAB24662.1. AK148379 mRNA. Translation: BAE28518.1.
IPI	IPI00133519.
RefSeq	NP_079646.1. XP_001472683.1.
UniGene	Mm.475629
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	Q9D1A0.
Genome annotation databases
Ensembl	ENSMUST00000021938; ENSMUSP00000021938; ENSMUSG00000021482; Mus musculus. [Genome view]
GeneID	100044674. 66129.
KEGG	mmu:100044674. mmu:66129.
UCSC	uc007qyt.1. mouse.
Organism-specific databases
MGI	MGI:1913379. 1110018J18Rik.
Phylogenomic databases
HOGENOM	Q9D1A0.
HOVERGEN	Q9D1A0.
OMA	VRHFLCY.
Gene expression databases
ArrayExpress	Q9D1A0.
Bgee	Q9D1A0.
CleanEx	MM_1110018J18RIK.
Genevestigator	Q9D1A0.
GermOnline	ENSMUSG00000021482. Mus musculus.
Family and domain databases
ProtoNet	Search...
Other Resources
NextBio	458165.

Entry information

Entry name

CI021_MOUSE

Accession

Primary (citable) accession number: Q9D1A0
Secondary accession number(s): Q3UFP2, Q9CVT8

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 13, 2004
Last sequence update:	June 1, 2001
Last modified:	November 3, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HPI (Human Proteome Initiative)