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Q9D125

- RT25_MOUSE

UniProt

Q9D125 - RT25_MOUSE

Protein

28S ribosomal protein S25, mitochondrial

Gene

Mrps25

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 100 (01 Oct 2014)
      Sequence version 1 (27 Apr 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: MGI

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    28S ribosomal protein S25, mitochondrial
    Short name:
    MRP-S25
    Short name:
    S25mt
    Gene namesi
    Name:Mrps25
    Synonyms:Rpms25
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 6

    Organism-specific databases

    MGIiMGI:1928140. Mrps25.

    Subcellular locationi

    Mitochondrion By similarity

    GO - Cellular componenti

    1. mitochondrial small ribosomal subunit Source: MGI
    2. mitochondrion Source: MGI

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 17117128S ribosomal protein S25, mitochondrialPRO_0000087709Add
    BLAST

    Proteomic databases

    MaxQBiQ9D125.
    PaxDbiQ9D125.
    PRIDEiQ9D125.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9D125.
    BgeeiQ9D125.
    CleanExiMM_MRPS25.
    GenevestigatoriQ9D125.

    Interactioni

    Subunit structurei

    Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9D125.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S25/L51 family.Curated

    Phylogenomic databases

    eggNOGiNOG330435.
    GeneTreeiENSGT00640000091558.
    HOGENOMiHOG000007270.
    HOVERGENiHBG002378.
    InParanoidiQ9D125.
    KOiK17404.
    OMAiNFGPKKY.
    OrthoDBiEOG7NCV4X.
    PhylomeDBiQ9D125.
    TreeFamiTF300292.

    Family and domain databases

    Gene3Di3.40.30.10. 1 hit.
    InterProiIPR007741. Ribosome/NADH_DH.
    IPR012336. Thioredoxin-like_fold.
    [Graphical view]
    PfamiPF05047. L51_S25_CI-B8. 1 hit.
    [Graphical view]
    SMARTiSM00916. L51_S25_CI-B8. 1 hit.
    [Graphical view]
    SUPFAMiSSF52833. SSF52833. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9D125-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPMKGRFPIR RTLQYLGRGD VVFKESVKIM TVNYNTYGEL GEGARKFVFF    50
    NIPQIQYKNP WVQIMMFKNM TPSPFLRFYL DSGEQVLVDV ETKSNKEIME 100
    HIKKILGKKE ETLREEELEK QQRFHPGNFG PRKYCLRECM CEVEGQVPCP 150
    GLVPLPKEMT GKYKAALKAS T 171
    Length:171
    Mass (Da):19,920
    Last modified:April 27, 2001 - v1
    Checksum:iF7CD5B07163FB14A
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti60 – 601P → S in BAB28705. (PubMed:16141072)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK004037 mRNA. Translation: BAB23136.1.
    AK013196 mRNA. Translation: BAB28705.1.
    BC022953 mRNA. Translation: AAH22953.1.
    CCDSiCCDS20373.1.
    RefSeqiNP_079854.2. NM_025578.4.
    UniGeneiMm.476867.
    Mm.87062.

    Genome annotation databases

    EnsembliENSMUST00000140438; ENSMUSP00000114402; ENSMUSG00000014551.
    GeneIDi64658.
    KEGGimmu:64658.
    UCSCiuc009cyu.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK004037 mRNA. Translation: BAB23136.1 .
    AK013196 mRNA. Translation: BAB28705.1 .
    BC022953 mRNA. Translation: AAH22953.1 .
    CCDSi CCDS20373.1.
    RefSeqi NP_079854.2. NM_025578.4.
    UniGenei Mm.476867.
    Mm.87062.

    3D structure databases

    ProteinModelPortali Q9D125.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    MaxQBi Q9D125.
    PaxDbi Q9D125.
    PRIDEi Q9D125.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000140438 ; ENSMUSP00000114402 ; ENSMUSG00000014551 .
    GeneIDi 64658.
    KEGGi mmu:64658.
    UCSCi uc009cyu.1. mouse.

    Organism-specific databases

    CTDi 64432.
    MGIi MGI:1928140. Mrps25.

    Phylogenomic databases

    eggNOGi NOG330435.
    GeneTreei ENSGT00640000091558.
    HOGENOMi HOG000007270.
    HOVERGENi HBG002378.
    InParanoidi Q9D125.
    KOi K17404.
    OMAi NFGPKKY.
    OrthoDBi EOG7NCV4X.
    PhylomeDBi Q9D125.
    TreeFami TF300292.

    Miscellaneous databases

    NextBioi 320147.
    PROi Q9D125.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q9D125.
    Bgeei Q9D125.
    CleanExi MM_MRPS25.
    Genevestigatori Q9D125.

    Family and domain databases

    Gene3Di 3.40.30.10. 1 hit.
    InterProi IPR007741. Ribosome/NADH_DH.
    IPR012336. Thioredoxin-like_fold.
    [Graphical view ]
    Pfami PF05047. L51_S25_CI-B8. 1 hit.
    [Graphical view ]
    SMARTi SM00916. L51_S25_CI-B8. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52833. SSF52833. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Embryo.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: FVB/N.
      Tissue: Liver.
    3. Lubec G., Sunyer B., Chen W.-Q.
      Submitted (JAN-2009) to UniProtKB
      Cited for: PROTEIN SEQUENCE OF 12-18, IDENTIFICATION BY MASS SPECTROMETRY.
      Strain: OF1.
      Tissue: Hippocampus.

    Entry informationi

    Entry nameiRT25_MOUSE
    AccessioniPrimary (citable) accession number: Q9D125
    Secondary accession number(s): Q9CYY8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 27, 2001
    Last sequence update: April 27, 2001
    Last modified: October 1, 2014
    This is version 100 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3