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Q9D0G0

- RT30_MOUSE

UniProt

Q9D0G0 - RT30_MOUSE

Protein

28S ribosomal protein S30, mitochondrial

Gene

Mrps30

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    28S ribosomal protein S30, mitochondrial
    Short name:
    MRP-S30
    Short name:
    S30mt
    Gene namesi
    Name:Mrps30
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 13

    Organism-specific databases

    MGIiMGI:1926237. Mrps30.

    Subcellular locationi

    Mitochondrion By similarity

    GO - Cellular componenti

    1. mitochondrion Source: MGI
    2. ribosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 44244228S ribosomal protein S30, mitochondrialPRO_0000087721Add
    BLAST

    Proteomic databases

    MaxQBiQ9D0G0.
    PaxDbiQ9D0G0.
    PRIDEiQ9D0G0.

    PTM databases

    PhosphoSiteiQ9D0G0.

    Expressioni

    Gene expression databases

    BgeeiQ9D0G0.
    CleanExiMM_MRPS30.
    GenevestigatoriQ9D0G0.

    Interactioni

    Subunit structurei

    Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9D0G0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S30/L37 family.Curated

    Phylogenomic databases

    eggNOGiNOG241777.
    GeneTreeiENSGT00390000001442.
    HOGENOMiHOG000059255.
    HOVERGENiHBG036127.
    InParanoidiB2KF79.
    KOiK17409.
    OMAiARYPPIV.
    OrthoDBiEOG7SR4M3.
    PhylomeDBiQ9D0G0.
    TreeFamiTF320686.

    Family and domain databases

    InterProiIPR010793. Ribosomal_L37/S30.
    [Graphical view]
    PfamiPF07147. PDCD9. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9D0G0-1 [UniParc]FASTAAdd to Basket

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    MAAARYWKLV PRGRGLSQNA AAKASATAPE VRDLEVVATP VARYPPIVAS    50
    MTADSKAARQ RRVQRWQATV HAAPSVDEKI RILTKMQFKK YVVHPQISAL 100
    NADRWYQSFT KTVFVSGLPP APALSPPPPS LDLAALRAAV CDCILQEQVY 150
    VRRRRPRSLF DRRQALASSI LDQVVRTLVN LLAPLNPVLS TAALDCKRSV 200
    DFYWLRGEER IPAGHRKGHI DALRYQINDK PHNQIRISKQ LPEFVPLDYS 250
    IPTEIPVMKC KPDKLPLFRR QYENSIFTGS KTADPCCYGH TQFHLIPDRL 300
    KRERLIRQNQ AEQVEAVFRA NAIASLFAWT GAQAMYQGFW SEADVTRPFV 350
    SQAVITDGKY FSFFCYQLNT LALTVQADQN NPRKNLCWGS QSQPLYETVE 400
    DNDVKGFDDG TLLQIVHFLL NKPREDGAQL LASQEKELDL GP 442
    Length:442
    Mass (Da):49,939
    Last modified:June 1, 2001 - v1
    Checksum:iC35A540D3A524BCC
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti121 – 1211A → T in AAH29784. (PubMed:15489334)Curated
    Sequence conflicti127 – 1271P → SPS in AAH29784. (PubMed:15489334)Curated
    Sequence conflicti155 – 1573RPR → QPG in AAH29784. (PubMed:15489334)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK011476 mRNA. Translation: BAB27644.1.
    AK151642 mRNA. Translation: BAE30572.1.
    CT030257 Genomic DNA. Translation: CAQ51573.1.
    BC029784 mRNA. Translation: AAH29784.1.
    AL355719 mRNA. Translation: CAB90812.1.
    CCDSiCCDS26794.1.
    RefSeqiNP_067531.1. NM_021556.3.
    UniGeneiMm.143810.

    Genome annotation databases

    EnsembliENSMUST00000022245; ENSMUSP00000022245; ENSMUSG00000021731.
    GeneIDi59054.
    KEGGimmu:59054.
    UCSCiuc007ryr.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK011476 mRNA. Translation: BAB27644.1 .
    AK151642 mRNA. Translation: BAE30572.1 .
    CT030257 Genomic DNA. Translation: CAQ51573.1 .
    BC029784 mRNA. Translation: AAH29784.1 .
    AL355719 mRNA. Translation: CAB90812.1 .
    CCDSi CCDS26794.1.
    RefSeqi NP_067531.1. NM_021556.3.
    UniGenei Mm.143810.

    3D structure databases

    ProteinModelPortali Q9D0G0.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q9D0G0.

    Proteomic databases

    MaxQBi Q9D0G0.
    PaxDbi Q9D0G0.
    PRIDEi Q9D0G0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000022245 ; ENSMUSP00000022245 ; ENSMUSG00000021731 .
    GeneIDi 59054.
    KEGGi mmu:59054.
    UCSCi uc007ryr.1. mouse.

    Organism-specific databases

    CTDi 10884.
    MGIi MGI:1926237. Mrps30.

    Phylogenomic databases

    eggNOGi NOG241777.
    GeneTreei ENSGT00390000001442.
    HOGENOMi HOG000059255.
    HOVERGENi HBG036127.
    InParanoidi B2KF79.
    KOi K17409.
    OMAi ARYPPIV.
    OrthoDBi EOG7SR4M3.
    PhylomeDBi Q9D0G0.
    TreeFami TF320686.

    Miscellaneous databases

    ChiTaRSi MRPS30. mouse.
    NextBioi 314698.
    PROi Q9D0G0.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q9D0G0.
    CleanExi MM_MRPS30.
    Genevestigatori Q9D0G0.

    Family and domain databases

    InterProi IPR010793. Ribosomal_L37/S30.
    [Graphical view ]
    Pfami PF07147. PDCD9. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Bone marrow and Embryo.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: FVB/N.
      Tissue: Mammary gland.
    4. The European IMAGE consortium
      Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 283-442.

    Entry informationi

    Entry nameiRT30_MOUSE
    AccessioniPrimary (citable) accession number: Q9D0G0
    Secondary accession number(s): B2KF79
    , Q3U9U4, Q9CYS8, Q9JJQ2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 19, 2002
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3