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Q9D0B6

- PBDC1_MOUSE

UniProt

Q9D0B6 - PBDC1_MOUSE

Protein

Protein PBDC1

Gene

Pbdc1

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein PBDC1
    Alternative name(s):
    Polysaccharide biosynthesis domain-containing protein 1
    Gene namesi
    Name:Pbdc1
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome X

    Organism-specific databases

    MGIiMGI:1914933. Pbdc1.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 198198Protein PBDC1PRO_0000254106Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei126 – 1261PhosphoserineBy similarity
    Modified residuei184 – 1841PhosphoserineBy similarity

    Keywords - PTMi

    Phosphoprotein

    Proteomic databases

    MaxQBiQ9D0B6.
    PaxDbiQ9D0B6.
    PRIDEiQ9D0B6.

    PTM databases

    PhosphoSiteiQ9D0B6.

    Expressioni

    Gene expression databases

    BgeeiQ9D0B6.
    CleanExiMM_2610029G23RIK.
    GenevestigatoriQ9D0B6.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000033577.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9D0B6.
    SMRiQ9D0B6. Positions 27-155.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PBDC1 family.Curated

    Phylogenomic databases

    eggNOGiNOG285457.
    GeneTreeiENSGT00390000016333.
    HOGENOMiHOG000189636.
    HOVERGENiHBG059712.
    InParanoidiB1AUP5.
    OMAiLRLNCSQ.
    OrthoDBiEOG70GMHC.
    PhylomeDBiQ9D0B6.
    TreeFamiTF314442.

    Family and domain databases

    Gene3Di1.10.3560.10. 1 hit.
    InterProiIPR021148. Put_polysacc_synth.
    IPR008476. UPF0368_met/fun.
    IPR023139. Yst0336-like_domain.
    [Graphical view]
    PANTHERiPTHR13410. PTHR13410. 1 hit.
    PfamiPF04669. Polysacc_synt_4. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q9D0B6-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MDAAGESEEP VSGEALSIAH ALSHPPESYG NDPDIEMAWA IRAMQHAEVY    50
    YKLISSVDPQ FLKLTKVDDQ IYSEFREIFE TLRVDVLDPE ELKSESAKEK 100
    WRPFCLKFEG IVEDYNYGTL LRLDCSQGYT EENTIFAPRI QFFAIEIARN 150
    REGYNKAVSV SIQDKEGEEG AGNKEEAAEK GADSGGEKEE GANREGEK 198
    Length:198
    Mass (Da):22,223
    Last modified:June 1, 2001 - v1
    Checksum:i625C4B264303825C
    GO
    Isoform 2 (identifier: Q9D0B6-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         138-198: Missing.

    Show »
    Length:137
    Mass (Da):15,659
    Checksum:iEE2E8D1F91C83AF2
    GO

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei138 – 19861Missing in isoform 2. 1 PublicationVSP_021180Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK007655 mRNA. Translation: BAB25165.3.
    AK011610 mRNA. Translation: BAB27731.1.
    AK030507 mRNA. Translation: BAC26994.1.
    AK076889 mRNA. Translation: BAC36520.1.
    AL671897 Genomic DNA. Translation: CAM18672.1.
    BC035042 mRNA. Translation: AAH35042.1.
    BC044719 mRNA. Translation: AAH44719.1.
    BC061070 mRNA. Translation: AAH61070.1.
    CCDSiCCDS30334.1. [Q9D0B6-1]
    CCDS72419.1. [Q9D0B6-2]
    RefSeqiNP_001268800.1. NM_001281871.1. [Q9D0B6-2]
    NP_080588.1. NM_026312.5. [Q9D0B6-1]
    UniGeneiMm.273405.

    Genome annotation databases

    EnsembliENSMUST00000033577; ENSMUSP00000033577; ENSMUSG00000031226. [Q9D0B6-1]
    ENSMUST00000119477; ENSMUSP00000113288; ENSMUSG00000031226. [Q9D0B6-2]
    GeneIDi67683.
    KEGGimmu:67683.
    UCSCiuc009uat.1. mouse. [Q9D0B6-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK007655 mRNA. Translation: BAB25165.3 .
    AK011610 mRNA. Translation: BAB27731.1 .
    AK030507 mRNA. Translation: BAC26994.1 .
    AK076889 mRNA. Translation: BAC36520.1 .
    AL671897 Genomic DNA. Translation: CAM18672.1 .
    BC035042 mRNA. Translation: AAH35042.1 .
    BC044719 mRNA. Translation: AAH44719.1 .
    BC061070 mRNA. Translation: AAH61070.1 .
    CCDSi CCDS30334.1. [Q9D0B6-1 ]
    CCDS72419.1. [Q9D0B6-2 ]
    RefSeqi NP_001268800.1. NM_001281871.1. [Q9D0B6-2 ]
    NP_080588.1. NM_026312.5. [Q9D0B6-1 ]
    UniGenei Mm.273405.

    3D structure databases

    ProteinModelPortali Q9D0B6.
    SMRi Q9D0B6. Positions 27-155.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000033577.

    PTM databases

    PhosphoSitei Q9D0B6.

    Proteomic databases

    MaxQBi Q9D0B6.
    PaxDbi Q9D0B6.
    PRIDEi Q9D0B6.

    Protocols and materials databases

    DNASUi 67683.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000033577 ; ENSMUSP00000033577 ; ENSMUSG00000031226 . [Q9D0B6-1 ]
    ENSMUST00000119477 ; ENSMUSP00000113288 ; ENSMUSG00000031226 . [Q9D0B6-2 ]
    GeneIDi 67683.
    KEGGi mmu:67683.
    UCSCi uc009uat.1. mouse. [Q9D0B6-1 ]

    Organism-specific databases

    CTDi 51260.
    MGIi MGI:1914933. Pbdc1.

    Phylogenomic databases

    eggNOGi NOG285457.
    GeneTreei ENSGT00390000016333.
    HOGENOMi HOG000189636.
    HOVERGENi HBG059712.
    InParanoidi B1AUP5.
    OMAi LRLNCSQ.
    OrthoDBi EOG70GMHC.
    PhylomeDBi Q9D0B6.
    TreeFami TF314442.

    Miscellaneous databases

    NextBioi 325247.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q9D0B6.
    CleanExi MM_2610029G23RIK.
    Genevestigatori Q9D0B6.

    Family and domain databases

    Gene3Di 1.10.3560.10. 1 hit.
    InterProi IPR021148. Put_polysacc_synth.
    IPR008476. UPF0368_met/fun.
    IPR023139. Yst0336-like_domain.
    [Graphical view ]
    PANTHERi PTHR13410. PTHR13410. 1 hit.
    Pfami PF04669. Polysacc_synt_4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
      Strain: C57BL/6J.
      Tissue: Embryo, Pancreas, Pituitary and Testis.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Strain: C57BL/6J and FVB/N.
      Tissue: Brain, Colon and Thymus.

    Entry informationi

    Entry nameiPBDC1_MOUSE
    AccessioniPrimary (citable) accession number: Q9D0B6
    Secondary accession number(s): B1AUP5, Q8C5Z2, Q9CVL0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 31, 2006
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3