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Q9D0B6 (PBDC1_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 80. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein PBDC1
Alternative name(s):
Polysaccharide biosynthesis domain-containing protein 1
Gene names
Name:Pbdc1
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length198 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the PBDC1 family.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q9D0B6-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q9D0B6-2)

The sequence of this isoform differs from the canonical sequence as follows:
     138-198: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 198198Protein PBDC1
PRO_0000254106

Amino acid modifications

Modified residue1261Phosphoserine By similarity
Modified residue1841Phosphoserine By similarity

Natural variations

Alternative sequence138 – 19861Missing in isoform 2.
VSP_021180

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 625C4B264303825C

FASTA19822,223
        10         20         30         40         50         60 
MDAAGESEEP VSGEALSIAH ALSHPPESYG NDPDIEMAWA IRAMQHAEVY YKLISSVDPQ 

        70         80         90        100        110        120 
FLKLTKVDDQ IYSEFREIFE TLRVDVLDPE ELKSESAKEK WRPFCLKFEG IVEDYNYGTL 

       130        140        150        160        170        180 
LRLDCSQGYT EENTIFAPRI QFFAIEIARN REGYNKAVSV SIQDKEGEEG AGNKEEAAEK 

       190 
GADSGGEKEE GANREGEK 

« Hide

Isoform 2 [UniParc].

Checksum: EE2E8D1F91C83AF2
Show »

FASTA13715,659

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
Strain: C57BL/6J.
Tissue: Embryo, Pancreas, Pituitary and Testis.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Strain: C57BL/6J and FVB/N.
Tissue: Brain, Colon and Thymus.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK007655 mRNA. Translation: BAB25165.3.
AK011610 mRNA. Translation: BAB27731.1.
AK030507 mRNA. Translation: BAC26994.1.
AK076889 mRNA. Translation: BAC36520.1.
AL671897 Genomic DNA. Translation: CAM18672.1.
BC035042 mRNA. Translation: AAH35042.1.
BC044719 mRNA. Translation: AAH44719.1.
BC061070 mRNA. Translation: AAH61070.1.
RefSeqNP_001268800.1. NM_001281871.1.
NP_080588.1. NM_026312.5.
UniGeneMm.273405.

3D structure databases

ProteinModelPortalQ9D0B6.
SMRQ9D0B6. Positions 27-155.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000033577.

PTM databases

PhosphoSiteQ9D0B6.

Proteomic databases

PaxDbQ9D0B6.
PRIDEQ9D0B6.

Protocols and materials databases

DNASU67683.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000033577; ENSMUSP00000033577; ENSMUSG00000031226. [Q9D0B6-1]
ENSMUST00000119477; ENSMUSP00000113288; ENSMUSG00000031226. [Q9D0B6-2]
GeneID67683.
KEGGmmu:67683.
UCSCuc009uat.1. mouse. [Q9D0B6-1]

Organism-specific databases

CTD51260.
MGIMGI:1914933. Pbdc1.

Phylogenomic databases

eggNOGNOG285457.
GeneTreeENSGT00390000016333.
HOGENOMHOG000189636.
HOVERGENHBG059712.
InParanoidB1AUP5.
OMALRLNCSQ.
OrthoDBEOG70GMHC.
PhylomeDBQ9D0B6.
TreeFamTF314442.

Gene expression databases

BgeeQ9D0B6.
CleanExMM_2610029G23RIK.
GenevestigatorQ9D0B6.

Family and domain databases

Gene3D1.10.3560.10. 1 hit.
InterProIPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERPTHR13410. PTHR13410. 1 hit.
PfamPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio325247.
SOURCESearch...

Entry information

Entry namePBDC1_MOUSE
AccessionPrimary (citable) accession number: Q9D0B6
Secondary accession number(s): B1AUP5, Q8C5Z2, Q9CVL0
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: June 1, 2001
Last modified: April 16, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot