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Q9D0B6

- PBDC1_MOUSE

UniProt

Q9D0B6 - PBDC1_MOUSE

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Protein

Protein PBDC1

Gene

Pbdc1

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PBDC1
Alternative name(s):
Polysaccharide biosynthesis domain-containing protein 1
Gene namesi
Name:Pbdc1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:1914933. Pbdc1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 198198Protein PBDC1PRO_0000254106Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei126 – 1261PhosphoserineBy similarity
Modified residuei184 – 1841PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9D0B6.
PaxDbiQ9D0B6.
PRIDEiQ9D0B6.

PTM databases

PhosphoSiteiQ9D0B6.

Expressioni

Gene expression databases

BgeeiQ9D0B6.
CleanExiMM_2610029G23RIK.
GenevestigatoriQ9D0B6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000033577.

Structurei

3D structure databases

ProteinModelPortaliQ9D0B6.
SMRiQ9D0B6. Positions 27-155.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PBDC1 family.Curated

Phylogenomic databases

eggNOGiNOG285457.
GeneTreeiENSGT00390000016333.
HOGENOMiHOG000189636.
HOVERGENiHBG059712.
InParanoidiQ9D0B6.
OMAiLRLNCSQ.
OrthoDBiEOG70GMHC.
PhylomeDBiQ9D0B6.
TreeFamiTF314442.

Family and domain databases

Gene3Di1.10.3560.10. 1 hit.
InterProiIPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERiPTHR13410. PTHR13410. 1 hit.
PfamiPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9D0B6-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDAAGESEEP VSGEALSIAH ALSHPPESYG NDPDIEMAWA IRAMQHAEVY
60 70 80 90 100
YKLISSVDPQ FLKLTKVDDQ IYSEFREIFE TLRVDVLDPE ELKSESAKEK
110 120 130 140 150
WRPFCLKFEG IVEDYNYGTL LRLDCSQGYT EENTIFAPRI QFFAIEIARN
160 170 180 190
REGYNKAVSV SIQDKEGEEG AGNKEEAAEK GADSGGEKEE GANREGEK
Length:198
Mass (Da):22,223
Last modified:June 1, 2001 - v1
Checksum:i625C4B264303825C
GO
Isoform 2 (identifier: Q9D0B6-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     138-198: Missing.

Show »
Length:137
Mass (Da):15,659
Checksum:iEE2E8D1F91C83AF2
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei138 – 19861Missing in isoform 2. 1 PublicationVSP_021180Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007655 mRNA. Translation: BAB25165.3.
AK011610 mRNA. Translation: BAB27731.1.
AK030507 mRNA. Translation: BAC26994.1.
AK076889 mRNA. Translation: BAC36520.1.
AL671897 Genomic DNA. Translation: CAM18672.1.
BC035042 mRNA. Translation: AAH35042.1.
BC044719 mRNA. Translation: AAH44719.1.
BC061070 mRNA. Translation: AAH61070.1.
CCDSiCCDS30334.1. [Q9D0B6-1]
CCDS72419.1. [Q9D0B6-2]
RefSeqiNP_001268800.1. NM_001281871.1. [Q9D0B6-2]
NP_080588.1. NM_026312.5. [Q9D0B6-1]
UniGeneiMm.273405.

Genome annotation databases

EnsembliENSMUST00000033577; ENSMUSP00000033577; ENSMUSG00000031226. [Q9D0B6-1]
ENSMUST00000119477; ENSMUSP00000113288; ENSMUSG00000031226. [Q9D0B6-2]
GeneIDi67683.
KEGGimmu:67683.
UCSCiuc009uat.1. mouse. [Q9D0B6-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007655 mRNA. Translation: BAB25165.3 .
AK011610 mRNA. Translation: BAB27731.1 .
AK030507 mRNA. Translation: BAC26994.1 .
AK076889 mRNA. Translation: BAC36520.1 .
AL671897 Genomic DNA. Translation: CAM18672.1 .
BC035042 mRNA. Translation: AAH35042.1 .
BC044719 mRNA. Translation: AAH44719.1 .
BC061070 mRNA. Translation: AAH61070.1 .
CCDSi CCDS30334.1. [Q9D0B6-1 ]
CCDS72419.1. [Q9D0B6-2 ]
RefSeqi NP_001268800.1. NM_001281871.1. [Q9D0B6-2 ]
NP_080588.1. NM_026312.5. [Q9D0B6-1 ]
UniGenei Mm.273405.

3D structure databases

ProteinModelPortali Q9D0B6.
SMRi Q9D0B6. Positions 27-155.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000033577.

PTM databases

PhosphoSitei Q9D0B6.

Proteomic databases

MaxQBi Q9D0B6.
PaxDbi Q9D0B6.
PRIDEi Q9D0B6.

Protocols and materials databases

DNASUi 67683.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000033577 ; ENSMUSP00000033577 ; ENSMUSG00000031226 . [Q9D0B6-1 ]
ENSMUST00000119477 ; ENSMUSP00000113288 ; ENSMUSG00000031226 . [Q9D0B6-2 ]
GeneIDi 67683.
KEGGi mmu:67683.
UCSCi uc009uat.1. mouse. [Q9D0B6-1 ]

Organism-specific databases

CTDi 51260.
MGIi MGI:1914933. Pbdc1.

Phylogenomic databases

eggNOGi NOG285457.
GeneTreei ENSGT00390000016333.
HOGENOMi HOG000189636.
HOVERGENi HBG059712.
InParanoidi Q9D0B6.
OMAi LRLNCSQ.
OrthoDBi EOG70GMHC.
PhylomeDBi Q9D0B6.
TreeFami TF314442.

Miscellaneous databases

NextBioi 325247.
SOURCEi Search...

Gene expression databases

Bgeei Q9D0B6.
CleanExi MM_2610029G23RIK.
Genevestigatori Q9D0B6.

Family and domain databases

Gene3Di 1.10.3560.10. 1 hit.
InterProi IPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view ]
PANTHERi PTHR13410. PTHR13410. 1 hit.
Pfami PF04669. Polysacc_synt_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: C57BL/6J.
    Tissue: Embryo, Pancreas, Pituitary and Testis.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: C57BL/6J and FVB/N.
    Tissue: Brain, Colon and Thymus.

Entry informationi

Entry nameiPBDC1_MOUSE
AccessioniPrimary (citable) accession number: Q9D0B6
Secondary accession number(s): B1AUP5, Q8C5Z2, Q9CVL0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: June 1, 2001
Last modified: October 29, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3