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Protein

Protein PBDC1

Gene

Pbdc1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PBDC1
Alternative name(s):
Polysaccharide biosynthesis domain-containing protein 1
Gene namesi
Name:Pbdc1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome X

Organism-specific databases

MGIiMGI:1914933. Pbdc1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 198198Protein PBDC1PRO_0000254106Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei126 – 1261PhosphoserineBy similarity
Modified residuei184 – 1841PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9D0B6.
PaxDbiQ9D0B6.
PRIDEiQ9D0B6.

PTM databases

PhosphoSiteiQ9D0B6.

Expressioni

Gene expression databases

BgeeiQ9D0B6.
CleanExiMM_2610029G23RIK.
GenevestigatoriQ9D0B6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000033577.

Structurei

3D structure databases

ProteinModelPortaliQ9D0B6.
SMRiQ9D0B6. Positions 27-155.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PBDC1 family.Curated

Phylogenomic databases

eggNOGiNOG285457.
GeneTreeiENSGT00390000016333.
HOGENOMiHOG000189636.
HOVERGENiHBG059712.
InParanoidiQ9D0B6.
OMAiLRLNCSQ.
OrthoDBiEOG70GMHC.
PhylomeDBiQ9D0B6.
TreeFamiTF314442.

Family and domain databases

Gene3Di1.10.3560.10. 1 hit.
InterProiIPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERiPTHR13410. PTHR13410. 1 hit.
PfamiPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9D0B6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDAAGESEEP VSGEALSIAH ALSHPPESYG NDPDIEMAWA IRAMQHAEVY
60 70 80 90 100
YKLISSVDPQ FLKLTKVDDQ IYSEFREIFE TLRVDVLDPE ELKSESAKEK
110 120 130 140 150
WRPFCLKFEG IVEDYNYGTL LRLDCSQGYT EENTIFAPRI QFFAIEIARN
160 170 180 190
REGYNKAVSV SIQDKEGEEG AGNKEEAAEK GADSGGEKEE GANREGEK
Length:198
Mass (Da):22,223
Last modified:June 1, 2001 - v1
Checksum:i625C4B264303825C
GO
Isoform 2 (identifier: Q9D0B6-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     138-198: Missing.

Show »
Length:137
Mass (Da):15,659
Checksum:iEE2E8D1F91C83AF2
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei138 – 19861Missing in isoform 2. 1 PublicationVSP_021180Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK007655 mRNA. Translation: BAB25165.3.
AK011610 mRNA. Translation: BAB27731.1.
AK030507 mRNA. Translation: BAC26994.1.
AK076889 mRNA. Translation: BAC36520.1.
AL671897 Genomic DNA. Translation: CAM18672.1.
BC035042 mRNA. Translation: AAH35042.1.
BC044719 mRNA. Translation: AAH44719.1.
BC061070 mRNA. Translation: AAH61070.1.
CCDSiCCDS30334.1. [Q9D0B6-1]
CCDS72419.1. [Q9D0B6-2]
RefSeqiNP_001268800.1. NM_001281871.1. [Q9D0B6-2]
NP_080588.1. NM_026312.5. [Q9D0B6-1]
UniGeneiMm.273405.

Genome annotation databases

EnsembliENSMUST00000033577; ENSMUSP00000033577; ENSMUSG00000031226. [Q9D0B6-1]
ENSMUST00000119477; ENSMUSP00000113288; ENSMUSG00000031226. [Q9D0B6-2]
GeneIDi67683.
KEGGimmu:67683.
UCSCiuc009uat.1. mouse. [Q9D0B6-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK007655 mRNA. Translation: BAB25165.3.
AK011610 mRNA. Translation: BAB27731.1.
AK030507 mRNA. Translation: BAC26994.1.
AK076889 mRNA. Translation: BAC36520.1.
AL671897 Genomic DNA. Translation: CAM18672.1.
BC035042 mRNA. Translation: AAH35042.1.
BC044719 mRNA. Translation: AAH44719.1.
BC061070 mRNA. Translation: AAH61070.1.
CCDSiCCDS30334.1. [Q9D0B6-1]
CCDS72419.1. [Q9D0B6-2]
RefSeqiNP_001268800.1. NM_001281871.1. [Q9D0B6-2]
NP_080588.1. NM_026312.5. [Q9D0B6-1]
UniGeneiMm.273405.

3D structure databases

ProteinModelPortaliQ9D0B6.
SMRiQ9D0B6. Positions 27-155.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000033577.

PTM databases

PhosphoSiteiQ9D0B6.

Proteomic databases

MaxQBiQ9D0B6.
PaxDbiQ9D0B6.
PRIDEiQ9D0B6.

Protocols and materials databases

DNASUi67683.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000033577; ENSMUSP00000033577; ENSMUSG00000031226. [Q9D0B6-1]
ENSMUST00000119477; ENSMUSP00000113288; ENSMUSG00000031226. [Q9D0B6-2]
GeneIDi67683.
KEGGimmu:67683.
UCSCiuc009uat.1. mouse. [Q9D0B6-1]

Organism-specific databases

CTDi51260.
MGIiMGI:1914933. Pbdc1.

Phylogenomic databases

eggNOGiNOG285457.
GeneTreeiENSGT00390000016333.
HOGENOMiHOG000189636.
HOVERGENiHBG059712.
InParanoidiQ9D0B6.
OMAiLRLNCSQ.
OrthoDBiEOG70GMHC.
PhylomeDBiQ9D0B6.
TreeFamiTF314442.

Miscellaneous databases

NextBioi325247.
PROiQ9D0B6.
SOURCEiSearch...

Gene expression databases

BgeeiQ9D0B6.
CleanExiMM_2610029G23RIK.
GenevestigatoriQ9D0B6.

Family and domain databases

Gene3Di1.10.3560.10. 1 hit.
InterProiIPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERiPTHR13410. PTHR13410. 1 hit.
PfamiPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: C57BL/6J.
    Tissue: Embryo, Pancreas, Pituitary and Testis.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: C57BL/6J and FVB/N.
    Tissue: Brain, Colon and Thymus.

Entry informationi

Entry nameiPBDC1_MOUSE
AccessioniPrimary (citable) accession number: Q9D0B6
Secondary accession number(s): B1AUP5, Q8C5Z2, Q9CVL0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: June 1, 2001
Last modified: April 29, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.