ID   SSBP2_MOUSE             Reviewed;         361 AA.
AC   Q9CYZ8; B1B188; Q99LX9;
DT   10-JAN-2003, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2001, sequence version 1.
DT   24-JAN-2024, entry version 160.
DE   RecName: Full=Single-stranded DNA-binding protein 2;
DE   AltName: Full=Sequence-specific single-stranded-DNA-binding protein 2;
GN   Name=Ssbp2; Synonyms=Ssdp2;
OS   Mus musculus (Mouse).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
OX   NCBI_TaxID=10090;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC   STRAIN=NMRI; TISSUE=Brain cortex;
RA   Speer N., Tarabykin V., Britanova O., Lukyanov S., Gruss P.;
RT   "A novel member of the SSDP gene family, SSDP2, is expressed in deep layers
RT   during murine cortical development.";
RL   Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC   STRAIN=C57BL/6J; TISSUE=Embryo;
RX   PubMed=16141072; DOI=10.1126/science.1112014;
RA   Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
RA   Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
RA   Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.,
RA   Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R.,
RA   Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T.,
RA   Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A.,
RA   Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B.,
RA   Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M.,
RA   Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S.,
RA   Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
RA   Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D.,
RA   Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M.,
RA   Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H.,
RA   Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V.,
RA   Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S.,
RA   Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H.,
RA   Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N.,
RA   Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F.,
RA   Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G.,
RA   Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,
RA   Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
RA   Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
RA   Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S.,
RA   Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K.,
RA   Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R.,
RA   van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H.,
RA   Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M.,
RA   Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C.,
RA   Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S.,
RA   Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K.,
RA   Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M.,
RA   Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C.,
RA   Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A.,
RA   Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309:1559-1563(2005).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=C57BL/6J;
RX   PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
RA   Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X.,
RA   Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y.,
RA   Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S.,
RA   Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R.,
RA   Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K.,
RA   Eichler E.E., Ponting C.P.;
RT   "Lineage-specific biology revealed by a finished genome assembly of the
RT   mouse.";
RL   PLoS Biol. 7:E1000112-E1000112(2009).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [5]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-321 AND THR-333, AND
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Spleen;
RX   PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
RA   Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
RA   Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
RT   "A tissue-specific atlas of mouse protein phosphorylation and expression.";
RL   Cell 143:1174-1189(2010).
RN   [6]
RP   ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-6, AND IDENTIFICATION BY MASS
RP   SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Embryonic fibroblast;
RX   PubMed=23806337; DOI=10.1016/j.molcel.2013.06.001;
RA   Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y.,
RA   Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.;
RT   "SIRT5-mediated lysine desuccinylation impacts diverse metabolic
RT   pathways.";
RL   Mol. Cell 50:919-930(2013).
RN   [7]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Embryo;
RX   PubMed=24129315; DOI=10.1074/mcp.o113.027870;
RA   Guo A., Gu H., Zhou J., Mulhern D., Wang Y., Lee K.A., Yang V., Aguiar M.,
RA   Kornhauser J., Jia X., Ren J., Beausoleil S.A., Silva J.C., Vemulapalli V.,
RA   Bedford M.T., Comb M.J.;
RT   "Immunoaffinity enrichment and mass spectrometry analysis of protein
RT   methylation.";
RL   Mol. Cell. Proteomics 13:372-387(2014).
CC   -!- INTERACTION:
CC       Q9CYZ8; Q9WUH2: Lhx9; NbExp=3; IntAct=EBI-309962, EBI-309943;
CC       Q9CYZ8; Q60769: Tnfaip3; NbExp=2; IntAct=EBI-309962, EBI-646595;
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q9CYZ8-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q9CYZ8-2; Sequence=VSP_006259;
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AY037837; AAK71881.1; -; mRNA.
DR   EMBL; AK013177; BAB28693.1; -; mRNA.
DR   EMBL; AC154320; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CT009700; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC002176; AAH02176.1; -; mRNA.
DR   CCDS; CCDS26676.1; -. [Q9CYZ8-2]
DR   CCDS; CCDS26677.1; -. [Q9CYZ8-1]
DR   RefSeq; NP_077148.1; NM_024186.5. [Q9CYZ8-2]
DR   RefSeq; NP_077234.2; NM_024272.4. [Q9CYZ8-1]
DR   AlphaFoldDB; Q9CYZ8; -.
DR   SMR; Q9CYZ8; -.
DR   BioGRID; 211844; 18.
DR   IntAct; Q9CYZ8; 20.
DR   MINT; Q9CYZ8; -.
DR   STRING; 10090.ENSMUSP00000004094; -.
DR   GlyGen; Q9CYZ8; 6 sites, 1 O-linked glycan (6 sites).
DR   iPTMnet; Q9CYZ8; -.
DR   PhosphoSitePlus; Q9CYZ8; -.
DR   EPD; Q9CYZ8; -.
DR   MaxQB; Q9CYZ8; -.
DR   PaxDb; 10090-ENSMUSP00000004094; -.
DR   ProteomicsDB; 258734; -. [Q9CYZ8-1]
DR   ProteomicsDB; 258735; -. [Q9CYZ8-2]
DR   Pumba; Q9CYZ8; -.
DR   Antibodypedia; 12817; 206 antibodies from 32 providers.
DR   DNASU; 66970; -.
DR   Ensembl; ENSMUST00000004094.15; ENSMUSP00000004094.9; ENSMUSG00000003992.16. [Q9CYZ8-1]
DR   Ensembl; ENSMUST00000042122.15; ENSMUSP00000037115.9; ENSMUSG00000003992.16. [Q9CYZ8-2]
DR   GeneID; 66970; -.
DR   KEGG; mmu:66970; -.
DR   UCSC; uc007rjv.2; mouse. [Q9CYZ8-1]
DR   UCSC; uc007rjw.2; mouse. [Q9CYZ8-2]
DR   AGR; MGI:1914220; -.
DR   CTD; 23635; -.
DR   MGI; MGI:1914220; Ssbp2.
DR   VEuPathDB; HostDB:ENSMUSG00000003992; -.
DR   eggNOG; KOG4594; Eukaryota.
DR   GeneTree; ENSGT00950000183049; -.
DR   HOGENOM; CLU_053914_1_0_1; -.
DR   InParanoid; Q9CYZ8; -.
DR   OMA; GMPGMNX; -.
DR   OrthoDB; 4371601at2759; -.
DR   PhylomeDB; Q9CYZ8; -.
DR   TreeFam; TF318961; -.
DR   BioGRID-ORCS; 66970; 1 hit in 78 CRISPR screens.
DR   ChiTaRS; Ssbp2; mouse.
DR   PRO; PR:Q9CYZ8; -.
DR   Proteomes; UP000000589; Chromosome 13.
DR   RNAct; Q9CYZ8; Protein.
DR   Bgee; ENSMUSG00000003992; Expressed in metanephric mesenchyme and 271 other cell types or tissues.
DR   ExpressionAtlas; Q9CYZ8; baseline and differential.
DR   GO; GO:0005737; C:cytoplasm; ISO:MGI.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003697; F:single-stranded DNA binding; IEA:InterPro.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   InterPro; IPR006594; LisH.
DR   InterPro; IPR008116; SSDP_DNA-bd.
DR   PANTHER; PTHR12610; SINGLE STRANDED DNA BINDING PROTEIN; 1.
DR   PANTHER; PTHR12610:SF23; SINGLE-STRANDED DNA-BINDING PROTEIN 2; 1.
DR   Pfam; PF04503; SSDP; 2.
DR   PRINTS; PR01743; SSDNABINDING.
DR   SMART; SM00667; LisH; 1.
DR   PROSITE; PS50896; LISH; 1.
DR   Genevisible; Q9CYZ8; MM.
PE   1: Evidence at protein level;
KW   Acetylation; Alternative splicing; DNA-binding; Nucleus; Phosphoprotein;
KW   Reference proteome; Transcription; Transcription regulation.
FT   CHAIN           1..361
FT                   /note="Single-stranded DNA-binding protein 2"
FT                   /id="PRO_0000123827"
FT   DOMAIN          18..50
FT                   /note="LisH"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00126"
FT   REGION          147..171
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          194..361
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        222..236
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        309..333
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        345..361
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         6
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0007744|PubMed:23806337"
FT   MOD_RES         321
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:21183079"
FT   MOD_RES         333
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0007744|PubMed:21183079"
FT   VAR_SEQ         95..124
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:15489334"
FT                   /id="VSP_006259"
SQ   SEQUENCE   361 AA;  37846 MW;  EC6F98DCEBFF662E CRC64;
     MYGKGKSNSS AVPSDSQARE KLALYVYEYL LHVGAQKSAQ TFLSEIRWEK NITLGEPPGF
     LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP SPVLGNMPPG DGMPVGPVPP
     GFFQPFMSPR YPGGPRPPLR IPNQALGGVP GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP
     PRGMVPLGPQ NYGGAMRPPL NALGGPGMPG MNMGPGGGRP WPNPTNANSI PYSSASPGNY
     VGPPGGGGPP GTPIMPSPAD STNSGDNMYT LMNAVPPGPN RPNFPMGPGS DGPMGGLGGM
     ESHHMNGSLG SGDMDSISKN SPNNMSLSNQ PGTPRDDGEM GGNFLNPFQS ESYSPSMTMS
     V
//