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Protein

Protein Njmu-R1

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

May have a role in spermatogenesis.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Protein Njmu-R1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1917841. 5730455P16Rik.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 393393Protein Njmu-R1PRO_0000096866Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei8 – 81PhosphoserineBy similarity
Modified residuei18 – 181PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ9CYI0.
MaxQBiQ9CYI0.
PaxDbiQ9CYI0.
PRIDEiQ9CYI0.

PTM databases

iPTMnetiQ9CYI0.
PhosphoSiteiQ9CYI0.

Expressioni

Gene expression databases

BgeeiQ9CYI0.
CleanExiMM_5730455P16RIK.
ExpressionAtlasiQ9CYI0. baseline and differential.
GenevisibleiQ9CYI0. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000099515.

Structurei

3D structure databases

ProteinModelPortaliQ9CYI0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IH4D. Eukaryota.
ENOG410Z836. LUCA.
GeneTreeiENSGT00390000005481.
HOGENOMiHOG000113790.
HOVERGENiHBG006503.
InParanoidiQ9CYI0.
OrthoDBiEOG7QG448.
PhylomeDBiQ9CYI0.
TreeFamiTF330763.

Family and domain databases

InterProiIPR028280. Njmu-R1.
[Graphical view]
PfamiPF15053. Njmu-R1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9CYI0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLPSLQESLD GDEKELESSE EGGSAEERRL EPPPSSHYCL YSFRGSRLTQ
60 70 80 90 100
NRGDSDDGRS GGINAETPSG DDFSLSLVDT NLPSEVEPEL RSFIAKRLSK
110 120 130 140 150
GAVFEGLGNV ASVELRIPGY RVGCYYCLFQ QEKLLPEIAA MESEHNPSEY
160 170 180 190 200
VVCFLGGSEK GLELFRLELD KYIQGLKNNM NCEERSLGND VKSYLNSWYE
210 220 230 240 250
DVVCPIQRVV LLFQEKLTFL LHAALSYTPV EFKESDEKTK RDINRFLSVA
260 270 280 290 300
SLQGLIHEGT MTSLCMAMTE EQHKSVIIDC SGPQPQFHNA GSNRFCEDWM
310 320 330 340 350
QAFLHGAEAG NPFLFRQVLE NFKLKAIQDT NNLKRFIRQA EMNHYALFKC
360 370 380 390
YMFLKNCGSG DILLKIVKVE HEEMPEAKSV VAVLEEFMRE ALV
Length:393
Mass (Da):44,422
Last modified:September 5, 2006 - v2
Checksum:i336D40805D12169A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK135352 mRNA. Translation: BAE22498.1.
AK153246 mRNA. Translation: BAE31837.1.
AL591146 Genomic DNA. Translation: CAI24748.1.
BC055024 mRNA. Translation: AAH55024.1.
CCDSiCCDS25132.1.
RefSeqiNP_081748.1. NM_027472.3.
UniGeneiMm.86860.

Genome annotation databases

EnsembliENSMUST00000103225; ENSMUSP00000099515; ENSMUSG00000057181.
GeneIDi70591.
KEGGimmu:70591.
UCSCiuc007klv.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK135352 mRNA. Translation: BAE22498.1.
AK153246 mRNA. Translation: BAE31837.1.
AL591146 Genomic DNA. Translation: CAI24748.1.
BC055024 mRNA. Translation: AAH55024.1.
CCDSiCCDS25132.1.
RefSeqiNP_081748.1. NM_027472.3.
UniGeneiMm.86860.

3D structure databases

ProteinModelPortaliQ9CYI0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000099515.

PTM databases

iPTMnetiQ9CYI0.
PhosphoSiteiQ9CYI0.

Proteomic databases

EPDiQ9CYI0.
MaxQBiQ9CYI0.
PaxDbiQ9CYI0.
PRIDEiQ9CYI0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000103225; ENSMUSP00000099515; ENSMUSG00000057181.
GeneIDi70591.
KEGGimmu:70591.
UCSCiuc007klv.2. mouse.

Organism-specific databases

MGIiMGI:1917841. 5730455P16Rik.

Phylogenomic databases

eggNOGiENOG410IH4D. Eukaryota.
ENOG410Z836. LUCA.
GeneTreeiENSGT00390000005481.
HOGENOMiHOG000113790.
HOVERGENiHBG006503.
InParanoidiQ9CYI0.
OrthoDBiEOG7QG448.
PhylomeDBiQ9CYI0.
TreeFamiTF330763.

Miscellaneous databases

PROiQ9CYI0.

Gene expression databases

BgeeiQ9CYI0.
CleanExiMM_5730455P16RIK.
ExpressionAtlasiQ9CYI0. baseline and differential.
GenevisibleiQ9CYI0. MM.

Family and domain databases

InterProiIPR028280. Njmu-R1.
[Graphical view]
PfamiPF15053. Njmu-R1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Bone marrow and Muellerian duct.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Mammary tumor.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Brown adipose tissue, Kidney, Lung, Pancreas, Spleen and Testis.

Entry informationi

Entry nameiNJMU_MOUSE
AccessioniPrimary (citable) accession number: Q9CYI0
Secondary accession number(s): Q7TMQ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 4, 2001
Last sequence update: September 5, 2006
Last modified: July 6, 2016
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.