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Protein

28S ribosomal protein S28, mitochondrial

Gene

Mrps28

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-MMU-5389840. Mitochondrial translation elongation.
R-MMU-5419276. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
28S ribosomal protein S28, mitochondrial
Short name:
MRP-S28
Short name:
S28mt
Gene namesi
Name:Mrps28
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:1913480. Mrps28.

Subcellular locationi

GO - Cellular componenti

  • mitochondrion Source: MGI
  • ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 7070MitochondrionBy similarityAdd
BLAST
Chaini71 – 18611628S ribosomal protein S28, mitochondrialPRO_0000087715Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei72 – 721PhosphoserineCombined sources
Modified residuei132 – 1321N6-acetyllysineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ9CY16.
MaxQBiQ9CY16.
PaxDbiQ9CY16.
PRIDEiQ9CY16.

PTM databases

iPTMnetiQ9CY16.
PhosphoSiteiQ9CY16.

Expressioni

Gene expression databases

BgeeiQ9CY16.
CleanExiMM_MRPS28.
GenevisibleiQ9CY16. MM.

Interactioni

Subunit structurei

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000038305.

Structurei

3D structure databases

ProteinModelPortaliQ9CY16.
SMRiQ9CY16. Positions 76-173.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG4078. Eukaryota.
ENOG4111RYH. LUCA.
GeneTreeiENSGT00390000001057.
HOGENOMiHOG000230806.
HOVERGENiHBG036126.
InParanoidiQ9CY16.
KOiK17407.
OMAiCRTRAVT.
OrthoDBiEOG7288SV.
PhylomeDBiQ9CY16.
TreeFamiTF315097.

Family and domain databases

InterProiIPR019375. Ribosomal_S28_mit.
[Graphical view]
PfamiPF10246. MRP-S35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9CY16-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAALCRSHAG TAGSRFLRAL VFSKPLRNAS TESGSESATH DSSAPRARSG
60 70 80 90 100
GFASALERHS DLQRKAELRL ESPKPVESFA SMLRHSPLTQ LGPAKDKLVI
110 120 130 140 150
GRIFHIVEDD LYIDFGGKFH CVCKRPDVDG EKYQRGTRVR LRLLDLELTS
160 170 180
RFLGGTTDTT ILEADAVLLG LQEIRDSKSR EEQPSK
Length:186
Mass (Da):20,520
Last modified:June 1, 2001 - v1
Checksum:i74EFA7A6611823B4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti60 – 601S → L in AAH28530 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK011036 mRNA. Translation: BAB27349.1.
BC028530 mRNA. Translation: AAH28530.1.
CCDSiCCDS17233.1.
RefSeqiNP_079710.3. NM_025434.3.
UniGeneiMm.38460.

Genome annotation databases

EnsembliENSMUST00000042148; ENSMUSP00000038305; ENSMUSG00000040269.
GeneIDi66230.
KEGGimmu:66230.
UCSCiuc008ooq.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK011036 mRNA. Translation: BAB27349.1.
BC028530 mRNA. Translation: AAH28530.1.
CCDSiCCDS17233.1.
RefSeqiNP_079710.3. NM_025434.3.
UniGeneiMm.38460.

3D structure databases

ProteinModelPortaliQ9CY16.
SMRiQ9CY16. Positions 76-173.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000038305.

PTM databases

iPTMnetiQ9CY16.
PhosphoSiteiQ9CY16.

Proteomic databases

EPDiQ9CY16.
MaxQBiQ9CY16.
PaxDbiQ9CY16.
PRIDEiQ9CY16.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000042148; ENSMUSP00000038305; ENSMUSG00000040269.
GeneIDi66230.
KEGGimmu:66230.
UCSCiuc008ooq.2. mouse.

Organism-specific databases

CTDi28957.
MGIiMGI:1913480. Mrps28.

Phylogenomic databases

eggNOGiKOG4078. Eukaryota.
ENOG4111RYH. LUCA.
GeneTreeiENSGT00390000001057.
HOGENOMiHOG000230806.
HOVERGENiHBG036126.
InParanoidiQ9CY16.
KOiK17407.
OMAiCRTRAVT.
OrthoDBiEOG7288SV.
PhylomeDBiQ9CY16.
TreeFamiTF315097.

Enzyme and pathway databases

ReactomeiR-MMU-5389840. Mitochondrial translation elongation.
R-MMU-5419276. Mitochondrial translation termination.

Miscellaneous databases

NextBioi321027.
PROiQ9CY16.
SOURCEiSearch...

Gene expression databases

BgeeiQ9CY16.
CleanExiMM_MRPS28.
GenevisibleiQ9CY16. MM.

Family and domain databases

InterProiIPR019375. Ribosomal_S28_mit.
[Graphical view]
PfamiPF10246. MRP-S35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryonic liver.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Mammary gland.
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-72, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  4. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-72, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brown adipose tissue, Heart, Kidney, Liver and Pancreas.

Entry informationi

Entry nameiRT28_MOUSE
AccessioniPrimary (citable) accession number: Q9CY16
Secondary accession number(s): Q8R2K6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: June 1, 2001
Last modified: May 11, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.