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Protein

Heterogeneous nuclear ribonucleoprotein A0

Gene

Hnrnpa0

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

mRNA-binding component of ribonucleosomes. Specifically binds AU-rich element (ARE)-containing mRNAs. Involved in post-transcriptional regulation of cytokines mRNAs.1 Publication

GO - Molecular functioni

GO - Biological processi

  • 3'-UTR-mediated mRNA stabilization Source: UniProtKB
  • inflammatory response Source: UniProtKB
  • response to lipopolysaccharide Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

ReactomeiR-MMU-72163. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Heterogeneous nuclear ribonucleoprotein A0
Short name:
hnRNP A0
Gene namesi
Name:Hnrnpa0
Synonyms:Hnrpa0
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 13

Organism-specific databases

MGIiMGI:1924384. Hnrnpa0.

Subcellular locationi

  • Nucleus By similarity

  • Note: Component of ribonucleosomes.By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 305305Heterogeneous nuclear ribonucleoprotein A0PRO_0000415269Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity
Modified residuei68 – 681PhosphoserineBy similarity
Modified residuei84 – 841Phosphoserine; by MAPKAPK21 Publication
Modified residuei133 – 1331N6-acetyllysineCombined sources
Cross-linki172 – 172Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki176 – 176Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei293 – 2931Dimethylated arginineBy similarity

Post-translational modificationi

Phosphorylated at Ser-84 by MAPKAPK2 in response to LPS treatment, promoting stabilization of GADD45A mRNA.1 Publication
Arg-293 is dimethylated, probably to asymmetric dimethylarginine.By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiQ9CX86.
MaxQBiQ9CX86.
PaxDbiQ9CX86.
PeptideAtlasiQ9CX86.
PRIDEiQ9CX86.

PTM databases

iPTMnetiQ9CX86.
PhosphoSiteiQ9CX86.

Expressioni

Gene expression databases

BgeeiENSMUSG00000007836.
GenevisibleiQ9CX86. MM.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi218538. 6 interactions.
IntActiQ9CX86. 2 interactions.
MINTiMINT-1868039.
STRINGi10090.ENSMUSP00000007980.

Structurei

3D structure databases

ProteinModelPortaliQ9CX86.
SMRiQ9CX86. Positions 2-179.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 8680RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini98 – 17578RRM 2PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi182 – 303122Gly-richAdd
BLAST

Sequence similaritiesi

Contains 2 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IQX5. Eukaryota.
ENOG410YF6E. LUCA.
GeneTreeiENSGT00760000118873.
HOGENOMiHOG000234442.
HOVERGENiHBG002295.
InParanoidiQ9CX86.
KOiK12894.
OMAiPKEDIHA.
OrthoDBiEOG091G1CPI.
PhylomeDBiQ9CX86.
TreeFamiTF351342.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9CX86-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENSQLCKLF IGGLNVQTSE SGLRGHFEAF GTLTDCVVVV NPQTKRSRCF
60 70 80 90 100
GFVTYSNVEE ADAAMAASPH AVDGNTVELK RAVSREDSAR PGAHAKVKKL
110 120 130 140 150
FVGGLKGDVA EGDLIEHFSQ FGAVEKAEII ADKQSGKKRG FGFVYFQSHD
160 170 180 190 200
AADKAAVVKF HPIQGHRVEV KKAVPKEDIH AGGGGARAAR GGRGGGRGRG
210 220 230 240 250
GGGGGGGRDQ NGLAKGGGGG GGGYNSYGGY GGYGAYGGGG GGGGSYGGSD
260 270 280 290 300
YGNGFGGFGS YSQHQSSYGP MKSGGGGGGG GSWGGRSNSG PYRGGYGGGY

GGGSF
Length:305
Mass (Da):30,530
Last modified:June 1, 2001 - v1
Checksum:iB3F3BB8C5480BB56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019388 mRNA. Translation: BAB31694.1.
AC165251 Genomic DNA. No translation available.
CCDSiCCDS49280.1.
RefSeqiNP_084148.1. NM_029872.1.
UniGeneiMm.490274.

Genome annotation databases

EnsembliENSMUST00000007980; ENSMUSP00000007980; ENSMUSG00000007836.
GeneIDi77134.
KEGGimmu:77134.
UCSCiuc007qtf.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019388 mRNA. Translation: BAB31694.1.
AC165251 Genomic DNA. No translation available.
CCDSiCCDS49280.1.
RefSeqiNP_084148.1. NM_029872.1.
UniGeneiMm.490274.

3D structure databases

ProteinModelPortaliQ9CX86.
SMRiQ9CX86. Positions 2-179.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi218538. 6 interactions.
IntActiQ9CX86. 2 interactions.
MINTiMINT-1868039.
STRINGi10090.ENSMUSP00000007980.

PTM databases

iPTMnetiQ9CX86.
PhosphoSiteiQ9CX86.

Proteomic databases

EPDiQ9CX86.
MaxQBiQ9CX86.
PaxDbiQ9CX86.
PeptideAtlasiQ9CX86.
PRIDEiQ9CX86.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000007980; ENSMUSP00000007980; ENSMUSG00000007836.
GeneIDi77134.
KEGGimmu:77134.
UCSCiuc007qtf.2. mouse.

Organism-specific databases

CTDi10949.
MGIiMGI:1924384. Hnrnpa0.

Phylogenomic databases

eggNOGiENOG410IQX5. Eukaryota.
ENOG410YF6E. LUCA.
GeneTreeiENSGT00760000118873.
HOGENOMiHOG000234442.
HOVERGENiHBG002295.
InParanoidiQ9CX86.
KOiK12894.
OMAiPKEDIHA.
OrthoDBiEOG091G1CPI.
PhylomeDBiQ9CX86.
TreeFamiTF351342.

Enzyme and pathway databases

ReactomeiR-MMU-72163. mRNA Splicing - Major Pathway.

Miscellaneous databases

ChiTaRSiHnrnpa0. mouse.
PROiQ9CX86.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000007836.
GenevisibleiQ9CX86. MM.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiROA0_MOUSE
AccessioniPrimary (citable) accession number: Q9CX86
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 25, 2012
Last sequence update: June 1, 2001
Last modified: September 7, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.