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Q9CV93 (Q9CV93_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:Muc5b MGI 1921430
OrganismMus musculus (Mouse) EMBL BAB26024.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length725 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Cellular componentSecreted SAAS SAAS006207
   PTMDisulfide bond SAAS SAAS006207
Gene Ontology (GO)
   Cellular_componentextracellular region

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAB26024.1

Sequences

Sequence LengthMass (Da)Tools
Q9CV93 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: F2D96B2CAB7552E4

FASTA72578,873
        10         20         30         40         50         60 
ARCQGNNQII LLEPEPVDNV TCANRHLPIK VWDQEPCHFH YECECFCSGW GHSHYLTFDG 

        70         80         90        100        110        120 
TSYTFLDNCT SVLMREIHPR HGNLSILAHS YYCGATTNVT SCPRALSVYY NSMEIILTIS 

       130        140        150        160        170        180 
TTESGKDESL IIWDQMWIRS GFSKNGVTVS LSGATTMSVN ISTIGTIITF DGNIFQIWLP 

       190        200        210        220        230        240 
YRYFSSNTEG QCGTCTNSQI DDCRRPDGTI ASDCQDMAKE WLVPGNSSSS CLAQPSPLPS 

       250        260        270        280        290        300 
TTPQTPVSST LTSTPCPSAP LCELMLSQVF AECHRLIPPD AFFRSCVSDH CNANITDMLC 

       310        320        330        340        350        360 
QSLEAYAALC RAQGVCTNWR NATGGLCDLS CPPTKEYRPC GPLHPASCNS RTQDSTTGML 

       370        380        390        400        410        420 
AEGCFCPENQ LLFNSRMDIC VSECPCVGPD GLPKFPGEHW ISNCQACVCE PGSVSVQCEP 

       430        440        450        460        470        480 
VKCESQDKPP QCTEAGFVTV TWPSADNPCC PETLCVCNST TCPKSLPTCE PGYELVQTHE 

       490        500        510        520        530        540 
NSSCCPSYSC RPRLCTYNDT IYGVGTTFPG GPCHTCTCLS DGDQEPKVEC KETNCTTSCP 

       550        560        570        580        590        600 
QGFKYTLVPE QCCGECLQNA CLTPEGHAVQ PNETWVNSPV DNCTAYHCMA ENGVYVLTPI 

       610        620        630        640        650        660 
PTSCPDVSNC TGTLRKTGCC YSCEKEDSST CQVHVNATVL RYKGCETEVN ITFCEGSCSG 

       670        680        690        700        710        720 
ISKYSMEAQA MERQCTCCQE SKVHDVAVTM QCPDGTVIQH TYTHIDECNC APACSSLPGT 


SMIAS 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[4]Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F. expand/collapse author list , Imotani K., Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[5]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB26024.1.
Tissue: Tongue EMBL BAB26024.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK009011 mRNA. Translation: BAB26024.1.
RefSeqNP_083077.2. NM_028801.2.
UniGeneMm.200752.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000081462.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID74180.
KEGGmmu:74180.

Organism-specific databases

CTD727897.
MGIMGI:1921430. Muc5b.

Phylogenomic databases

HOVERGENHBG104074.
InParanoidQ9CV93.
KOK13908.

Gene expression databases

GenevestigatorQ9CV93.

Family and domain databases

InterProIPR006207. Cys_knot_C.
IPR006208. Glyco_hormone_CN.
IPR002919. TIL_dom.
IPR014853. Unchr_dom_Cys-rich.
IPR001007. VWF_C.
IPR001846. VWF_type-D.
[Graphical view]
PfamPF08742. C8. 1 hit.
PF00007. Cys_knot. 1 hit.
PF00093. VWC. 1 hit.
PF00094. VWD. 1 hit.
[Graphical view]
SMARTSM00832. C8. 1 hit.
SM00041. CT. 1 hit.
SM00214. VWC. 2 hits.
SM00216. VWD. 1 hit.
[Graphical view]
SUPFAMSSF57567. SSF57567. 1 hit.
PROSITEPS01185. CTCK_1. 1 hit.
PS01225. CTCK_2. 1 hit.
PS01208. VWFC_1. 2 hits.
PS50184. VWFC_2. 2 hits.
PS51233. VWFD. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio340008.
SOURCESearch...

Entry information

Entry nameQ9CV93_MOUSE
AccessionPrimary (citable) accession number: Q9CV93
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: April 16, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)