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Q9CUT4 (Q9CUT4_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:Pkd1 MGI 97603
OrganismMus musculus (Mouse) EMBL BAB29468.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length212 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Gene Ontology (GO)
   Biological_processJAK-STAT cascade

Inferred from direct assay PubMed 12007403. Source: MGI

blood vessel development

Inferred from mutant phenotype PubMed 10677526. Source: MGI

branching morphogenesis of an epithelial tube

Inferred from electronic annotation. Source: Ensembl

calcium ion transmembrane transport

Traceable author statement PubMed 12007403. Source: GOC

calcium ion transport

Inferred from mutant phenotype PubMed 12514735. Source: MGI

cartilage condensation

Inferred from mutant phenotype PubMed 11593033. Source: MGI

cell cycle arrest

Inferred from direct assay PubMed 12007403. Source: MGI

cell-cell adhesion

Inferred from mutant phenotype PubMed 10677526. Source: MGI

detection of mechanical stimulus

Inferred from direct assay PubMed 15545994. Source: MGI

digestive tract development

Inferred from electronic annotation. Source: Ensembl

genitalia development

Inferred from electronic annotation. Source: Ensembl

heart development

Inferred from mutant phenotype PubMed 11593033. Source: MGI

in utero embryonic development

Inferred from mutant phenotype PubMed 16282979. Source: MGI

kidney development

Inferred from mutant phenotype PubMed 21518438. Source: MGI

liver development

Inferred from genetic interaction PubMed 21685914. Source: MGI

lung epithelium development

Inferred from electronic annotation. Source: Ensembl

mesonephric duct development

Inferred from electronic annotation. Source: Ensembl

metanephric ascending thin limb development

Inferred from electronic annotation. Source: Ensembl

metanephric collecting duct development

Inferred from electronic annotation. Source: Ensembl

metanephric distal tubule morphogenesis

Inferred from electronic annotation. Source: Ensembl

metanephric proximal tubule development

Inferred from electronic annotation. Source: Ensembl

neural tube development

Inferred from electronic annotation. Source: Ensembl

nitrogen compound metabolic process

Inferred from genetic interaction PubMed 21685914. Source: MGI

positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle

Inferred from electronic annotation. Source: Ensembl

positive regulation of cytosolic calcium ion concentration

Inferred from electronic annotation. Source: Ensembl

positive regulation of transcription from RNA polymerase II promoter

Inferred from electronic annotation. Source: Ensembl

regulation of mitotic spindle organization

Inferred from mutant phenotype PubMed 21685914. Source: MGI

regulation of proteasomal protein catabolic process

Inferred from mutant phenotype PubMed 23001567. Source: MGI

renal system development

Inferred from genetic interaction PubMed 21685914. Source: MGI

skin development

Inferred from electronic annotation. Source: Ensembl

spinal cord development

Inferred from electronic annotation. Source: Ensembl

   Cellular_componentGolgi apparatus

Inferred from electronic annotation. Source: Ensembl

basolateral plasma membrane

Inferred from electronic annotation. Source: Ensembl

cilium

Inferred from direct assay PubMed 12514735. Source: MGI

lateral plasma membrane

Inferred from electronic annotation. Source: Ensembl

motile primary cilium

Inferred from direct assay PubMed 15858826. Source: MGI

nucleus

Inferred from direct assay PubMed 15545994. Source: MGI

polycystin complex

Inferred from direct assay PubMed 11901144. Source: MGI

   Molecular_functioncalcium channel activity

Traceable author statement PubMed 12007403. Source: MGI

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAB29468.1

Sequences

Sequence LengthMass (Da)Tools
Q9CUT4 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: A8A993C2B65B6140

FASTA21223,598
        10         20         30         40         50         60 
ALRVWGALRL GAILLRWRYH ALRGELYRPA WEPQDYEMVE LFLRRLRLWM GFSKVKEFRH 

        70         80         90        100        110        120 
KVRFEGMDPL PSRSSRGSKS SPVVLPPSSG SEASHPSTSS SQPDGPSASL SRSTLKLEPE 

       130        140        150        160        170        180 
PSRLHAVFES LLVQFDRLNQ ATEDVYQLEQ QLQSLQGHGH NGPPSSPSPG CFPGSQPALP 

       190        200        210 
SRLSRASQGL DQTVGPNRVS LWPNNKVHPS ST 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[4]Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F. expand/collapse author list , Imotani K., Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[5]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB29468.1.
Tissue: Skin EMBL BAB29468.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK014622 mRNA. Translation: BAB29468.1.
UniGeneMm.290442.
Mm.30435.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:97603. Pkd1.

Phylogenomic databases

InParanoidQ9CUT4.

Gene expression databases

ArrayExpressQ9CUT4.
BgeeQ9CUT4.
GenevestigatorQ9CUT4.

Family and domain databases

ProtoNetSearch...

Other

ChiTaRSPkd1. mouse.
SOURCESearch...

Entry information

Entry nameQ9CUT4_MOUSE
AccessionPrimary (citable) accession number: Q9CUT4
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: April 16, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)