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Q9CSM4

- Q9CSM4_MOUSE

UniProt

Q9CSM4 - Q9CSM4_MOUSE

Protein

60S ribosomal protein L27

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L27UniRule annotation
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Proteomic databases

    PRIDEiQ9CSM4.

    Expressioni

    Gene expression databases

    BgeeiQ9CSM4.
    GenevestigatoriQ9CSM4.

    Interactioni

    Protein-protein interaction databases

    IntActiQ9CSM4. 2 interactions.
    MINTiMINT-4125229.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L27e family.UniRule annotation

    Phylogenomic databases

    InParanoidiQ9CSM4.

    Family and domain databases

    Gene3Di2.30.30.30. 1 hit.
    InterProiIPR014722. Rib_L2_dom2.
    IPR001141. Ribosomal_L27e.
    IPR018262. Ribosomal_L27e_CS.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view]
    PANTHERiPTHR10497. PTHR10497. 1 hit.
    PfamiPF01777. Ribosomal_L27e. 1 hit.
    [Graphical view]
    ProDomiPD009396. Ribosomal_L27e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF50104. SSF50104. 1 hit.
    PROSITEiPS01107. RIBOSOMAL_L27E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q9CSM4-1 [UniParc]FASTAAdd to Basket

    « Hide

    KVTAAMGKKK IAKRSKIKSF VKVYNYNHLM PTRYSVDIPL DKTVVNKDVF   50
    RDPALKRKAR REAKVKFEER YKTGKNKWFF QKLRF 85
    Length:85
    Mass (Da):10,211
    Last modified:June 1, 2001 - v1
    Checksum:i77EE8CD8F0D67A00
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK012441 mRNA. Translation: BAB28240.1.
    UniGeneiMm.340658.
    Mm.439813.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK012441 mRNA. Translation: BAB28240.1 .
    UniGenei Mm.340658.
    Mm.439813.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q9CSM4. 2 interactions.
    MINTi MINT-4125229.

    Proteomic databases

    PRIDEi Q9CSM4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    InParanoidi Q9CSM4.

    Gene expression databases

    Bgeei Q9CSM4.
    Genevestigatori Q9CSM4.

    Family and domain databases

    Gene3Di 2.30.30.30. 1 hit.
    InterProi IPR014722. Rib_L2_dom2.
    IPR001141. Ribosomal_L27e.
    IPR018262. Ribosomal_L27e_CS.
    IPR008991. Translation_prot_SH3-like.
    [Graphical view ]
    PANTHERi PTHR10497. PTHR10497. 1 hit.
    Pfami PF01777. Ribosomal_L27e. 1 hit.
    [Graphical view ]
    ProDomi PD009396. Ribosomal_L27e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF50104. SSF50104. 1 hit.
    PROSITEi PS01107. RIBOSOMAL_L27E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    5. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.

    Entry informationi

    Entry nameiQ9CSM4_MOUSE
    AccessioniPrimary (citable) accession number: Q9CSM4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2001
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)