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Q9CSH3

- RRP44_MOUSE

UniProt

Q9CSH3 - RRP44_MOUSE

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Protein
Exosome complex exonuclease RRP44
Gene
Dis3, Kiaa1008, Rrp44
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. DIS3 has both 3'-5' exonuclease and endonuclease activities By similarity.

Cofactori

Magnesium or manganese By similarity.

GO - Molecular functioni

  1. 3'-5'-exoribonuclease activity Source: UniProtKB
  2. RNA binding Source: UniProtKB-KW
  3. endonuclease activity Source: UniProtKB
  4. guanyl-nucleotide exchange factor activity Source: Ensembl

GO - Biological processi

  1. CUT catabolic process Source: Ensembl
  2. RNA phosphodiester bond hydrolysis, exonucleolytic Source: GOC
  3. nucleic acid phosphodiester bond hydrolysis Source: GOC
  4. rRNA catabolic process Source: Ensembl
  5. rRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Exonuclease, Hydrolase, Nuclease

Keywords - Biological processi

rRNA processing

Keywords - Ligandi

Magnesium, Manganese, RNA-binding

Enzyme and pathway databases

ReactomeiREACT_198696. KSRP destabilizes mRNA.

Names & Taxonomyi

Protein namesi
Recommended name:
Exosome complex exonuclease RRP44 (EC:3.1.13.-, EC:3.1.26.-)
Alternative name(s):
Protein DIS3 homolog
Ribosomal RNA-processing protein 44
Gene namesi
Name:Dis3
Synonyms:Kiaa1008, Rrp44
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 14

Organism-specific databases

MGIiMGI:1919912. Dis3.

Subcellular locationi

Cytoplasm By similarity. Nucleusnucleolus By similarity. Nucleusnucleoplasm By similarity. Nucleus By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. nuclear exosome (RNase complex) Source: UniProtKB
  3. nucleolus Source: UniProtKB-SubCell
  4. nucleoplasm Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Exosome, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 958958Exosome complex exonuclease RRP44
PRO_0000314757Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine By similarity
Modified residuei18 – 181N6-acetyllysine By similarity

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ9CSH3.
PaxDbiQ9CSH3.
PRIDEiQ9CSH3.

PTM databases

PhosphoSiteiQ9CSH3.

Expressioni

Gene expression databases

BgeeiQ9CSH3.
CleanExiMM_DIS3.
GenevestigatoriQ9CSH3.

Interactioni

Subunit structurei

Component of the RNA exosome complex. The catalytically inactive RNA exosome core (Exo-9) complex is believed to associate with catalytic subunits EXOSC10, and DIS3 or DIS3L in cytoplasmic- and nuclear-specific RNA exosome complex forms By similarity.

Protein-protein interaction databases

BioGridi215499. 1 interaction.
IntActiQ9CSH3. 1 interaction.
MINTiMINT-8178486.

Structurei

3D structure databases

ProteinModelPortaliQ9CSH3.
SMRiQ9CSH3. Positions 10-911.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini64 – 182119PINc
Add
BLAST

Sequence similaritiesi

Belongs to the RNR ribonuclease family.
Contains 1 PINc domain.

Phylogenomic databases

eggNOGiCOG0557.
GeneTreeiENSGT00530000063106.
HOGENOMiHOG000191945.
HOVERGENiHBG059397.
InParanoidiQ9CSH3.
KOiK12585.
OMAiENANDRN.
OrthoDBiEOG7KH9J1.
PhylomeDBiQ9CSH3.
TreeFamiTF105755.

Family and domain databases

Gene3Di3.40.50.1010. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR002716. PIN_dom.
IPR029060. PIN_domain-like.
IPR022966. RNase_II/R_CS.
[Graphical view]
PfamiPF13638. PIN_4. 1 hit.
[Graphical view]
SMARTiSM00670. PINc. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 4 hits.
SSF88723. SSF88723. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9CSH3-1 [UniParc]FASTAAdd to Basket

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MLRSKTFLKK TRAGGVVKIV REHYLRDDIG CGAPACSACG GAHAGPALEL    50
QPRDQASSLC PWPHYLLPDT NVLLHQIDVL EHPAIRNVIV LQTVMQEVRN 100
RSAPIYKRIR DVTNNQEKHF YTFTNEHHKE TYIEQEQGEN ANDRNDRAIR 150
VAAKWYNEHL KRVAADSQLQ VILITNDRKN KEKAVQEGIP AFTCEEYVKS 200
LTANPELIDR LAYLSDEMNE IESGKIIFSE HLPLSKLQQG IKSGSYLQGT 250
FRASRENYLE ATVWIHGDKE EEKEILIQGI KHLNRAVHED IVAVELLPRS 300
QWVAPSSVVL DDEGQNEDDV EKDEERELLL KTAVSEKMLR PTGRVVGIIK 350
RNWRPYCGML SKSDIKESRR HLFTPADKRI PRIRIETRQA SALEGRRIIV 400
AIDGWPRNSR YPNGHFVKNL GDVGEKETET EVLLLEHDVP HQPFSQAVLS 450
FLPRMPWSIT EEDMKNREDL RHLCVCSVDP PGCTDIDDAL HCRELSNGNL 500
EVGVHIADVS HFIRPGNALD QESARRGTTV YLCEKRIDMV PELLSSNLCS 550
LRSNVDRLAF SCIWEMNHNA EILKTRFTKS VINSKASLTY AEAQMRIDSA 600
AMNDDITTSL RGLNQLAKIL KKGRIEKGAL TLSSPEIRFH MDSETHDPID 650
LQTKELRETN SMVEEFMLLA NISVAKKIHE EFSEHALLRK HPAPPPSNYD 700
ILVKAAKSKN LQIKTDTAKS LADSLDRAES PDFPYLNTLL RILATRCMMQ 750
AVYFCSGMDN DFHHYGLASP IYTHFTSPIR RYADIIVHRL LAVAIGADCT 800
YPELTDKHKL SDICKNLNFR HKMAQYAQRA SVAFHTQLFF KSKGIVSEEA 850
YILFVRKNAI VVLIPKYGLE GTVFFEEKDK PKPRLAYDDE IPSLRIEGTV 900
FHVFDKVKVK ITLDSSNLQH QKIRMALVEP QIPGINIPPN VADKALTAPG 950
GKKRKLEK 958
Length:958
Mass (Da):108,838
Last modified:January 15, 2008 - v4
Checksum:i31045737557AB4AE
GO

Sequence cautioni

The sequence BAC98069.1 differs from that shown. Reason: Incompletely spliced mRNA.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti586 – 5883ASL → VSV in BAC98069. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK012840 mRNA. Translation: BAB28503.3.
AK032091 mRNA. Translation: BAC27692.1.
AK129259 Transcribed RNA. Translation: BAC98069.1. Sequence problems.
CCDSiCCDS49555.1.
RefSeqiNP_082591.2. NM_028315.2.
UniGeneiMm.163339.

Genome annotation databases

EnsembliENSMUST00000042471; ENSMUSP00000041906; ENSMUSG00000033166.
GeneIDi72662.
KEGGimmu:72662.
UCSCiuc007uuw.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK012840 mRNA. Translation: BAB28503.3 .
AK032091 mRNA. Translation: BAC27692.1 .
AK129259 Transcribed RNA. Translation: BAC98069.1 . Sequence problems.
CCDSi CCDS49555.1.
RefSeqi NP_082591.2. NM_028315.2.
UniGenei Mm.163339.

3D structure databases

ProteinModelPortali Q9CSH3.
SMRi Q9CSH3. Positions 10-911.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 215499. 1 interaction.
IntActi Q9CSH3. 1 interaction.
MINTi MINT-8178486.

PTM databases

PhosphoSitei Q9CSH3.

Proteomic databases

MaxQBi Q9CSH3.
PaxDbi Q9CSH3.
PRIDEi Q9CSH3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000042471 ; ENSMUSP00000041906 ; ENSMUSG00000033166 .
GeneIDi 72662.
KEGGi mmu:72662.
UCSCi uc007uuw.1. mouse.

Organism-specific databases

CTDi 22894.
MGIi MGI:1919912. Dis3.
Rougei Search...

Phylogenomic databases

eggNOGi COG0557.
GeneTreei ENSGT00530000063106.
HOGENOMi HOG000191945.
HOVERGENi HBG059397.
InParanoidi Q9CSH3.
KOi K12585.
OMAi ENANDRN.
OrthoDBi EOG7KH9J1.
PhylomeDBi Q9CSH3.
TreeFami TF105755.

Enzyme and pathway databases

Reactomei REACT_198696. KSRP destabilizes mRNA.

Miscellaneous databases

NextBioi 336687.
PROi Q9CSH3.
SOURCEi Search...

Gene expression databases

Bgeei Q9CSH3.
CleanExi MM_DIS3.
Genevestigatori Q9CSH3.

Family and domain databases

Gene3Di 3.40.50.1010. 1 hit.
InterProi IPR012340. NA-bd_OB-fold.
IPR002716. PIN_dom.
IPR029060. PIN_domain-like.
IPR022966. RNase_II/R_CS.
[Graphical view ]
Pfami PF13638. PIN_4. 1 hit.
[Graphical view ]
SMARTi SM00670. PINc. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 4 hits.
SSF88723. SSF88723. 1 hit.
PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-267 AND 272-958.
    Strain: C57BL/6J.
    Tissue: Medulla oblongata.
  2. "Prediction of the coding sequences of mouse homologues of KIAA gene: III. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
    Okazaki N., Kikuno R., Ohara R., Inamoto S., Koseki H., Hiraoka S., Saga Y., Nagase T., Ohara O., Koga H.
    DNA Res. 10:167-180(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 131-588.
    Tissue: Embryonic tail.

Entry informationi

Entry nameiRRP44_MOUSE
AccessioniPrimary (citable) accession number: Q9CSH3
Secondary accession number(s): Q6ZQ07, Q8C074
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 15, 2008
Last modified: September 3, 2014
This is version 89 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi