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Protein
Submitted name:

Putative uncharacterized protein

Gene

Upf3b

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Upf3bImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1915384. Upf3b.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PeptideAtlasiQ9CS15.
PRIDEiQ9CS15.

Expressioni

Gene expression databases

BgeeiENSMUSG00000036572.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075614.

Structurei

3D structure databases

ProteinModelPortaliQ9CS15.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini50 – 208Smg4_UPF3InterPro annotationAdd BLAST159

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili200 – 232Sequence analysisAdd BLAST33

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1295. Eukaryota.
ENOG41122XD. LUCA.
HOVERGENiHBG059714.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
PfamiPF03467. Smg4_UPF3. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q9CS15-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL
60 70 80 90 100
SKVVIRRLPP TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN
110 120 130 140 150
FKNQEDILLF RDRFDGYVFL DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK
160 170 180 190 200
VGTIEDDPEY RKFLESYATD NEKMTSTPET LLEEIEAKNR ELIAKRTTPL
210 220 230
LSFLKNKQRM REEKREERRR REIERKRQRE EE
Length:232
Mass (Da):27,675
Last modified:June 1, 2001 - v1
Checksum:i5DF971342EB5120B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei232Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019989 mRNA. Translation: BAB31954.1.
AK162222 mRNA. Translation: BAE36799.1.
UniGeneiMm.271160.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK019989 mRNA. Translation: BAB31954.1.
AK162222 mRNA. Translation: BAE36799.1.
UniGeneiMm.271160.

3D structure databases

ProteinModelPortaliQ9CS15.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075614.

Proteomic databases

PeptideAtlasiQ9CS15.
PRIDEiQ9CS15.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:1915384. Upf3b.

Phylogenomic databases

eggNOGiKOG1295. Eukaryota.
ENOG41122XD. LUCA.
HOVERGENiHBG059714.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000036572.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
PfamiPF03467. Smg4_UPF3. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ9CS15_MOUSE
AccessioniPrimary (citable) accession number: Q9CS15
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: November 2, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.