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Q9CS15

- Q9CS15_MOUSE

UniProt

Q9CS15 - Q9CS15_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Upf3b

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. mRNA binding Source: Ensembl
    2. nucleotide binding Source: InterPro

    GO - Biological processi

    1. positive regulation of translation Source: Ensembl

    Enzyme and pathway databases

    ReactomeiREACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:Upf3bImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:1915384. Upf3b.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. exon-exon junction complex Source: Ensembl

    Expressioni

    Gene expression databases

    GenevestigatoriQ9CS15.

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG059714.
    InParanoidiQ9CS15.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    InterProiIPR005120. Nonsense_mediated_decay_UPF3.
    IPR012677. Nucleotide-bd_a/b_plait.
    [Graphical view]
    PfamiPF03467. Smg4_UPF3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q9CS15-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL    50
    SKVVIRRLPP TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN 100
    FKNQEDILLF RDRFDGYVFL DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK 150
    VGTIEDDPEY RKFLESYATD NEKMTSTPET LLEEIEAKNR ELIAKRTTPL 200
    LSFLKNKQRM REEKREERRR REIERKRQRE EE 232
    Length:232
    Mass (Da):27,675
    Last modified:June 1, 2001 - v1
    Checksum:i5DF971342EB5120B
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei232 – 2321Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK019989 mRNA. Translation: BAB31954.1.
    AK162222 mRNA. Translation: BAE36799.1.
    UniGeneiMm.271160.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK019989 mRNA. Translation: BAB31954.1 .
    AK162222 mRNA. Translation: BAE36799.1 .
    UniGenei Mm.271160.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    MGIi MGI:1915384. Upf3b.

    Phylogenomic databases

    HOVERGENi HBG059714.
    InParanoidi Q9CS15.

    Enzyme and pathway databases

    Reactomei REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Miscellaneous databases

    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q9CS15.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    InterProi IPR005120. Nonsense_mediated_decay_UPF3.
    IPR012677. Nucleotide-bd_a/b_plait.
    [Graphical view ]
    Pfami PF03467. Smg4_UPF3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    5. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.
    7. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported.
    8. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.
    9. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: In vitro fertilized eggsImported and Whole bodyImported.

    Entry informationi

    Entry nameiQ9CS15_MOUSE
    AccessioniPrimary (citable) accession number: Q9CS15
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2001
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)