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Q9CQR2

- RS21_MOUSE

UniProt

Q9CQR2 - RS21_MOUSE

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Protein
40S ribosomal protein S21
Gene
Rps21
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. ribosome binding Source: UniProtKB
  2. structural constituent of ribosome Source: RefGenome

GO - Biological processi

  1. endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: RefGenome
  2. endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: RefGenome
  3. ribosomal small subunit biogenesis Source: RefGenome
  4. translational elongation Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S21
Gene namesi
Name:Rps21
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 2

Organism-specific databases

MGIiMGI:1913731. Rps21.

Subcellular locationi

GO - Cellular componenti

  1. cytosolic small ribosomal subunit Source: RefGenome
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 838340S ribosomal protein S21
PRO_0000194731Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine By similarity
Modified residuei81 – 811N6-acetyllysine By similarity

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ9CQR2.
PaxDbiQ9CQR2.
PRIDEiQ9CQR2.

PTM databases

PhosphoSiteiQ9CQR2.

Expressioni

Gene expression databases

BgeeiQ9CQR2.
CleanExiMM_RPS21.
GenevestigatoriQ9CQR2.

Interactioni

Protein-protein interaction databases

MINTiMINT-1857339.

Structurei

3D structure databases

ProteinModelPortaliQ9CQR2.
SMRiQ9CQR2. Positions 1-82.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG301320.
GeneTreeiENSGT00390000017515.
HOGENOMiHOG000183557.
HOVERGENiHBG005025.
InParanoidiQ9CQR2.
KOiK02971.
OMAiGLNSTHH.
OrthoDBiEOG7HQNBQ.
PhylomeDBiQ9CQR2.
TreeFamiTF300167.

Family and domain databases

InterProiIPR001931. Ribosomal_S21e.
IPR018279. Ribosomal_S21e_CS.
[Graphical view]
PANTHERiPTHR10442. PTHR10442. 1 hit.
PfamiPF01249. Ribosomal_S21e. 1 hit.
[Graphical view]
PIRSFiPIRSF002148. Ribosomal_S21e. 1 hit.
ProDomiPD006584. Ribosomal_S21e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS00996. RIBOSOMAL_S21E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9CQR2-1 [UniParc]FASTAAdd to Basket

« Hide

MQNDAGEFVD LYVPRKCSAS NRIIAAKDHA SIQMNVAEVD RTTGRFNGQF   50
KTYGICGAIR RMGESDDSIL RLAKADGIVS KNF 83
Length:83
Mass (Da):9,141
Last modified:June 1, 2001 - v1
Checksum:i67961651844D0DB5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007846 mRNA. Translation: BAB25301.1.
AK007850 mRNA. Translation: BAB25304.1.
AK010637 mRNA. Translation: BAB27081.1.
AK012488 mRNA. Translation: BAB28274.1.
BC027563 mRNA. Translation: AAH27563.1.
BC086912 mRNA. Translation: AAH86912.1.
CCDSiCCDS38376.1.
RefSeqiNP_079863.1. NM_025587.2.
XP_006500765.1. XM_006500702.1.
UniGeneiMm.289669.

Genome annotation databases

EnsembliENSMUST00000059080; ENSMUSP00000058432; ENSMUSG00000039001.
GeneIDi66481.
KEGGimmu:66481.
UCSCiuc008oiq.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK007846 mRNA. Translation: BAB25301.1 .
AK007850 mRNA. Translation: BAB25304.1 .
AK010637 mRNA. Translation: BAB27081.1 .
AK012488 mRNA. Translation: BAB28274.1 .
BC027563 mRNA. Translation: AAH27563.1 .
BC086912 mRNA. Translation: AAH86912.1 .
CCDSi CCDS38376.1.
RefSeqi NP_079863.1. NM_025587.2.
XP_006500765.1. XM_006500702.1.
UniGenei Mm.289669.

3D structure databases

ProteinModelPortali Q9CQR2.
SMRi Q9CQR2. Positions 1-82.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

MINTi MINT-1857339.

PTM databases

PhosphoSitei Q9CQR2.

Proteomic databases

MaxQBi Q9CQR2.
PaxDbi Q9CQR2.
PRIDEi Q9CQR2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000059080 ; ENSMUSP00000058432 ; ENSMUSG00000039001 .
GeneIDi 66481.
KEGGi mmu:66481.
UCSCi uc008oiq.1. mouse.

Organism-specific databases

CTDi 6227.
MGIi MGI:1913731. Rps21.

Phylogenomic databases

eggNOGi NOG301320.
GeneTreei ENSGT00390000017515.
HOGENOMi HOG000183557.
HOVERGENi HBG005025.
InParanoidi Q9CQR2.
KOi K02971.
OMAi GLNSTHH.
OrthoDBi EOG7HQNBQ.
PhylomeDBi Q9CQR2.
TreeFami TF300167.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

ChiTaRSi RpS21. mouse.
NextBioi 321812.
PROi Q9CQR2.
SOURCEi Search...

Gene expression databases

Bgeei Q9CQR2.
CleanExi MM_RPS21.
Genevestigatori Q9CQR2.

Family and domain databases

InterProi IPR001931. Ribosomal_S21e.
IPR018279. Ribosomal_S21e_CS.
[Graphical view ]
PANTHERi PTHR10442. PTHR10442. 1 hit.
Pfami PF01249. Ribosomal_S21e. 1 hit.
[Graphical view ]
PIRSFi PIRSF002148. Ribosomal_S21e. 1 hit.
ProDomi PD006584. Ribosomal_S21e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
PROSITEi PS00996. RIBOSOMAL_S21E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo, Embryonic stem cell and Pancreas.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Heart and Mammary gland.

Entry informationi

Entry nameiRS21_MOUSE
AccessioniPrimary (citable) accession number: Q9CQR2
Secondary accession number(s): Q5M9L3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: June 1, 2001
Last modified: September 3, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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