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Q9CQL4

- RM20_MOUSE

UniProt

Q9CQL4 - RM20_MOUSE

Protein

39S ribosomal protein L20, mitochondrial

Gene

Mrpl20

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    39S ribosomal protein L20, mitochondrial
    Short name:
    L20mt
    Short name:
    MRP-L20
    Gene namesi
    Name:Mrpl20
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 4

    Organism-specific databases

    MGIiMGI:2137221. Mrpl20.

    Subcellular locationi

    Mitochondrion 1 Publication

    GO - Cellular componenti

    1. mitochondrial ribosome Source: UniProtKB
    2. mitochondrion Source: MGI

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 4545MitochondrionSequence AnalysisAdd
    BLAST
    Chaini46 – 14910439S ribosomal protein L20, mitochondrialPRO_0000248280Add
    BLAST

    Proteomic databases

    MaxQBiQ9CQL4.
    PaxDbiQ9CQL4.
    PRIDEiQ9CQL4.

    PTM databases

    PhosphoSiteiQ9CQL4.

    Expressioni

    Gene expression databases

    BgeeiQ9CQL4.
    CleanExiMM_MRPL20.
    GenevestigatoriQ9CQL4.

    Interactioni

    Subunit structurei

    Interacts with OXA1L.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ9CQL4.
    SMRiQ9CQL4. Positions 10-124.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L20P family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG0292.
    GeneTreeiENSGT00390000015823.
    HOGENOMiHOG000035046.
    HOVERGENiHBG058971.
    InParanoidiQ9CQL4.
    KOiK02887.
    OMAiINAEARN.
    OrthoDBiEOG7PZS00.
    PhylomeDBiQ9CQL4.
    TreeFamiTF324702.

    Family and domain databases

    InterProiIPR005813. Ribosomal_L20.
    [Graphical view]
    PANTHERiPTHR10986. PTHR10986. 1 hit.
    PfamiPF00453. Ribosomal_L20. 1 hit.
    [Graphical view]
    PRINTSiPR00062. RIBOSOMALL20.
    TIGRFAMsiTIGR01032. rplT_bact. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9CQL4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVFLTTRLWL RNRLTDRYWR VQEVLKHAQH FRGRKNRCYR LAVRAVTRAF    50
    VKCTKARRLK KRNLRTLWIN RITAASQEHG LKYPAFIVNL IKCQVELNRK 100
    VLVDLAIYEP KTFKSLAALA KRRQQEGFAA ALGDGKEPEG IFSRVVQYH 149
    Length:149
    Mass (Da):17,595
    Last modified:June 1, 2001 - v1
    Checksum:i7B86D8C568B633AE
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti62 – 621R → L in BAB29744. (PubMed:16141072)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB049645 mRNA. Translation: BAB40850.1.
    AK004053 mRNA. Translation: BAB23143.1.
    AK011341 mRNA. Translation: BAB27555.1.
    AK015199 mRNA. Translation: BAB29744.1.
    AK168665 mRNA. Translation: BAE40517.1.
    BC039985 mRNA. Translation: AAH39985.1.
    CCDSiCCDS19041.1.
    RefSeqiNP_079846.1. NM_025570.2.
    XP_006539167.1. XM_006539104.1.
    UniGeneiMm.23825.

    Genome annotation databases

    EnsembliENSMUST00000030942; ENSMUSP00000030942; ENSMUSG00000029066.
    ENSMUST00000137487; ENSMUSP00000139122; ENSMUSG00000029066.
    GeneIDi66448.
    KEGGimmu:66448.
    UCSCiuc008weu.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB049645 mRNA. Translation: BAB40850.1 .
    AK004053 mRNA. Translation: BAB23143.1 .
    AK011341 mRNA. Translation: BAB27555.1 .
    AK015199 mRNA. Translation: BAB29744.1 .
    AK168665 mRNA. Translation: BAE40517.1 .
    BC039985 mRNA. Translation: AAH39985.1 .
    CCDSi CCDS19041.1.
    RefSeqi NP_079846.1. NM_025570.2.
    XP_006539167.1. XM_006539104.1.
    UniGenei Mm.23825.

    3D structure databases

    ProteinModelPortali Q9CQL4.
    SMRi Q9CQL4. Positions 10-124.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q9CQL4.

    Proteomic databases

    MaxQBi Q9CQL4.
    PaxDbi Q9CQL4.
    PRIDEi Q9CQL4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000030942 ; ENSMUSP00000030942 ; ENSMUSG00000029066 .
    ENSMUST00000137487 ; ENSMUSP00000139122 ; ENSMUSG00000029066 .
    GeneIDi 66448.
    KEGGi mmu:66448.
    UCSCi uc008weu.1. mouse.

    Organism-specific databases

    CTDi 55052.
    MGIi MGI:2137221. Mrpl20.

    Phylogenomic databases

    eggNOGi COG0292.
    GeneTreei ENSGT00390000015823.
    HOGENOMi HOG000035046.
    HOVERGENi HBG058971.
    InParanoidi Q9CQL4.
    KOi K02887.
    OMAi INAEARN.
    OrthoDBi EOG7PZS00.
    PhylomeDBi Q9CQL4.
    TreeFami TF324702.

    Miscellaneous databases

    NextBioi 321725.
    PROi Q9CQL4.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q9CQL4.
    CleanExi MM_MRPL20.
    Genevestigatori Q9CQL4.

    Family and domain databases

    InterProi IPR005813. Ribosomal_L20.
    [Graphical view ]
    PANTHERi PTHR10986. PTHR10986. 1 hit.
    Pfami PF00453. Ribosomal_L20. 1 hit.
    [Graphical view ]
    PRINTSi PR00062. RIBOSOMALL20.
    TIGRFAMsi TIGR01032. rplT_bact. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria."
      Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
      J. Biol. Chem. 276:21724-21736(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION.
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Stomach and Testis.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Mammary gland.
    4. Lubec G., Sunyer B., Chen W.-Q.
      Submitted (JAN-2009) to UniProtKB
      Cited for: PROTEIN SEQUENCE OF 83-92, IDENTIFICATION BY MASS SPECTROMETRY.
      Strain: OF1.
      Tissue: Hippocampus.

    Entry informationi

    Entry nameiRM20_MOUSE
    AccessioniPrimary (citable) accession number: Q9CQL4
    Secondary accession number(s): Q9D5L3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 5, 2006
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 97 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3