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Q9CQE3

- RT17_MOUSE

UniProt

Q9CQE3 - RT17_MOUSE

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Protein

28S ribosomal protein S17, mitochondrial

Gene

Mrps17

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
28S ribosomal protein S17, mitochondrial
Short name:
MRP-S17
Short name:
S17mt
Gene namesi
Name:Mrps17
Synonyms:Rpms17
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 5

Organism-specific databases

MGIiMGI:1913508. Mrps17.

Subcellular locationi

Mitochondrion By similarity

GO - Cellular componenti

  1. mitochondrion Source: MGI
  2. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 2020MitochondrionSequence AnalysisAdd
BLAST
Chaini21 – 12010028S ribosomal protein S17, mitochondrialPRO_0000030624Add
BLAST

Proteomic databases

MaxQBiQ9CQE3.
PaxDbiQ9CQE3.
PRIDEiQ9CQE3.

PTM databases

PhosphoSiteiQ9CQE3.

Expressioni

Gene expression databases

BgeeiQ9CQE3.
CleanExiMM_MRPS17.
ExpressionAtlasiQ9CQE3. baseline and differential.
GenevestigatoriQ9CQE3.

Interactioni

Subunit structurei

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Protein-protein interaction databases

IntActiQ9CQE3. 1 interaction.
STRINGi10090.ENSMUSP00000114012.

Structurei

3D structure databases

ProteinModelPortaliQ9CQE3.
SMRiQ9CQE3. Positions 1-120.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiNOG327347.
GeneTreeiENSGT00530000064130.
HOGENOMiHOG000126812.
HOVERGENiHBG002498.
InParanoidiQ9CQE3.
KOiK02961.
OMAiTVHAKWI.
OrthoDBiEOG741Z34.
PhylomeDBiQ9CQE3.
TreeFamiTF326484.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
[Graphical view]
PfamiPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9CQE3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSIVRSSVHA KWVVGKVIGT AMIKTAKVRA TRLVLDPYLL KYFNKRKTYF
60 70 80 90 100
AHDALQQCSV GDIVLLRALP VPRSKHVKHE LAEIIFKVGR VIDPVTGKPC
110 120
AGTAYLESPL SEPREELKVS
Length:120
Mass (Da):13,382
Last modified:April 27, 2001 - v1
Checksum:i98D6C28EDC3065AD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049951 mRNA. Translation: BAB41004.1.
AK009568 mRNA. Translation: BAB26365.1.
AK003008 mRNA. Translation: BAB22509.1.
AK007356 mRNA. Translation: BAB24983.1.
BC003890 mRNA. Translation: AAH03890.1.
CCDSiCCDS19697.1.
RefSeqiNP_079726.1. NM_025450.4.
XP_006504383.1. XM_006504320.1.
XP_006504384.1. XM_006504321.1.
XP_006504385.1. XM_006504322.1.
XP_006504386.1. XM_006504323.1.
XP_006504387.1. XM_006504324.1.
UniGeneiMm.249809.

Genome annotation databases

EnsembliENSMUST00000042191; ENSMUSP00000040281; ENSMUSG00000034211.
ENSMUST00000118420; ENSMUSP00000112993; ENSMUSG00000034211.
ENSMUST00000119576; ENSMUSP00000112779; ENSMUSG00000034211.
ENSMUST00000119604; ENSMUSP00000114012; ENSMUSG00000034211.
ENSMUST00000119985; ENSMUSP00000112762; ENSMUSG00000034211.
ENSMUST00000121339; ENSMUSP00000114125; ENSMUSG00000034211.
ENSMUST00000121813; ENSMUSP00000114059; ENSMUSG00000034211.
GeneIDi66258.
KEGGimmu:66258.
UCSCiuc008ztb.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049951 mRNA. Translation: BAB41004.1 .
AK009568 mRNA. Translation: BAB26365.1 .
AK003008 mRNA. Translation: BAB22509.1 .
AK007356 mRNA. Translation: BAB24983.1 .
BC003890 mRNA. Translation: AAH03890.1 .
CCDSi CCDS19697.1.
RefSeqi NP_079726.1. NM_025450.4.
XP_006504383.1. XM_006504320.1.
XP_006504384.1. XM_006504321.1.
XP_006504385.1. XM_006504322.1.
XP_006504386.1. XM_006504323.1.
XP_006504387.1. XM_006504324.1.
UniGenei Mm.249809.

3D structure databases

ProteinModelPortali Q9CQE3.
SMRi Q9CQE3. Positions 1-120.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q9CQE3. 1 interaction.
STRINGi 10090.ENSMUSP00000114012.

PTM databases

PhosphoSitei Q9CQE3.

Proteomic databases

MaxQBi Q9CQE3.
PaxDbi Q9CQE3.
PRIDEi Q9CQE3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000042191 ; ENSMUSP00000040281 ; ENSMUSG00000034211 .
ENSMUST00000118420 ; ENSMUSP00000112993 ; ENSMUSG00000034211 .
ENSMUST00000119576 ; ENSMUSP00000112779 ; ENSMUSG00000034211 .
ENSMUST00000119604 ; ENSMUSP00000114012 ; ENSMUSG00000034211 .
ENSMUST00000119985 ; ENSMUSP00000112762 ; ENSMUSG00000034211 .
ENSMUST00000121339 ; ENSMUSP00000114125 ; ENSMUSG00000034211 .
ENSMUST00000121813 ; ENSMUSP00000114059 ; ENSMUSG00000034211 .
GeneIDi 66258.
KEGGi mmu:66258.
UCSCi uc008ztb.1. mouse.

Organism-specific databases

CTDi 51373.
MGIi MGI:1913508. Mrps17.

Phylogenomic databases

eggNOGi NOG327347.
GeneTreei ENSGT00530000064130.
HOGENOMi HOG000126812.
HOVERGENi HBG002498.
InParanoidi Q9CQE3.
KOi K02961.
OMAi TVHAKWI.
OrthoDBi EOG741Z34.
PhylomeDBi Q9CQE3.
TreeFami TF326484.

Miscellaneous databases

NextBioi 321117.
PROi Q9CQE3.
SOURCEi Search...

Gene expression databases

Bgeei Q9CQE3.
CleanExi MM_MRPS17.
ExpressionAtlasi Q9CQE3. baseline and differential.
Genevestigatori Q9CQE3.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
[Graphical view ]
Pfami PF00366. Ribosomal_S17. 1 hit.
[Graphical view ]
ProDomi PD001295. Ribosomal_S17. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28S small subunit."
    Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
    J. Biol. Chem. 276:33181-33195(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain, Pancreas and Tongue.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.

Entry informationi

Entry nameiRT17_MOUSE
AccessioniPrimary (citable) accession number: Q9CQE3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: October 29, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3