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Q9CQE3 (RT17_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 100. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
28S ribosomal protein S17, mitochondrial

Short name=MRP-S17
Short name=S17mt
Gene names
Name:Mrps17
Synonyms:Rpms17
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length120 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subunit structure

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Subcellular location

Mitochondrion By similarity.

Sequence similarities

Belongs to the ribosomal protein S17P family.

Ontologies

Keywords
   Cellular componentMitochondrion
   DomainTransit peptide
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmitochondrion

Inferred from direct assay PubMed 14651853PubMed 18614015. Source: MGI

ribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 2020Mitochondrion Potential
Chain21 – 12010028S ribosomal protein S17, mitochondrial
PRO_0000030624

Sequences

Sequence LengthMass (Da)Tools
Q9CQE3 [UniParc].

Last modified April 27, 2001. Version 1.
Checksum: 98D6C28EDC3065AD

FASTA12013,382
        10         20         30         40         50         60 
MSIVRSSVHA KWVVGKVIGT AMIKTAKVRA TRLVLDPYLL KYFNKRKTYF AHDALQQCSV 

        70         80         90        100        110        120 
GDIVLLRALP VPRSKHVKHE LAEIIFKVGR VIDPVTGKPC AGTAYLESPL SEPREELKVS 

« Hide

References

« Hide 'large scale' references
[1]"Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28S small subunit."
Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
J. Biol. Chem. 276:33181-33195(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Brain, Pancreas and Tongue.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB049951 mRNA. Translation: BAB41004.1.
AK009568 mRNA. Translation: BAB26365.1.
AK003008 mRNA. Translation: BAB22509.1.
AK007356 mRNA. Translation: BAB24983.1.
BC003890 mRNA. Translation: AAH03890.1.
RefSeqNP_079726.1. NM_025450.4.
XP_006504383.1. XM_006504320.1.
XP_006504384.1. XM_006504321.1.
XP_006504385.1. XM_006504322.1.
XP_006504386.1. XM_006504323.1.
XP_006504387.1. XM_006504324.1.
UniGeneMm.249809.

3D structure databases

ProteinModelPortalQ9CQE3.
SMRQ9CQE3. Positions 9-88.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ9CQE3. 1 interaction.
STRING10090.ENSMUSP00000114012.

PTM databases

PhosphoSiteQ9CQE3.

Proteomic databases

PaxDbQ9CQE3.
PRIDEQ9CQE3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000042191; ENSMUSP00000040281; ENSMUSG00000034211.
ENSMUST00000118420; ENSMUSP00000112993; ENSMUSG00000034211.
ENSMUST00000119576; ENSMUSP00000112779; ENSMUSG00000034211.
ENSMUST00000119604; ENSMUSP00000114012; ENSMUSG00000034211.
ENSMUST00000119985; ENSMUSP00000112762; ENSMUSG00000034211.
ENSMUST00000121339; ENSMUSP00000114125; ENSMUSG00000034211.
ENSMUST00000121813; ENSMUSP00000114059; ENSMUSG00000034211.
GeneID66258.
KEGGmmu:66258.
UCSCuc008ztb.1. mouse.

Organism-specific databases

CTD51373.
MGIMGI:1913508. Mrps17.

Phylogenomic databases

eggNOGNOG327347.
GeneTreeENSGT00530000064130.
HOGENOMHOG000126812.
HOVERGENHBG002498.
InParanoidQ9CQE3.
KOK02961.
OMAIVRSSVH.
OrthoDBEOG741Z34.
PhylomeDBQ9CQE3.
TreeFamTF326484.

Gene expression databases

ArrayExpressQ9CQE3.
BgeeQ9CQE3.
CleanExMM_MRPS17.
GenevestigatorQ9CQE3.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
[Graphical view]
PfamPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
ProDomPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Other

NextBio321117.
PROQ9CQE3.
SOURCESearch...

Entry information

Entry nameRT17_MOUSE
AccessionPrimary (citable) accession number: Q9CQE3
Entry history
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: April 16, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot