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Q9CQ06 (RM24_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 99. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
39S ribosomal protein L24, mitochondrial

Short name=L24mt
Short name=MRP-L24
Gene names
Name:Mrpl24
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length216 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Mitochondrion By similarity HAMAP-Rule MF_01326_B.

Sequence similarities

Belongs to the ribosomal protein L24P family.

Contains 1 KOW domain.

Ontologies

Keywords
   Cellular componentMitochondrion
   DomainTransit peptide
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmitochondrion

Inferred from direct assay PubMed 18614015. Source: MGI

ribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 99Mitochondrion By similarity
Chain10 – 21620739S ribosomal protein L24, mitochondrial HAMAP-Rule MF_01326_B
PRO_0000270489

Regions

Domain56 – 8934KOW

Experimental info

Sequence conflict7 – 93LAL → FAS in BAB25991. Ref.1
Sequence conflict14 – 152TS → IC in BAB25991. Ref.1
Sequence conflict26 – 272PG → RS in BAB25991. Ref.1
Sequence conflict301A → G in BAB25991. Ref.1
Sequence conflict341K → Q in BAB25991. Ref.1
Sequence conflict421R → L in BAB22737. Ref.1
Sequence conflict481P → A in BAB25991. Ref.1
Sequence conflict1161L → F in BAB32014. Ref.1
Sequence conflict1431R → L in BAB22737. Ref.1
Sequence conflict1771T → I in BAB32014. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q9CQ06 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: DE869E7630AF599F

FASTA21624,945
        10         20         30         40         50         60 
MRLSALLALA SKATSSPFYR YGMSRPGSIA DKRKNPPWSR RRPVVVEPIS DEDWHLFCGD 

        70         80         90        100        110        120 
MVEILEGKDA GKQGKVVQVV RQRNWVVLEG LNTHYRYIGR TKDHRGTMIA SEAPLLHHQV 

       130        140        150        160        170        180 
KLVDPVDRKP TEIQWRFTEA GERVRVSTRS GRIIPKPEFP RADGIVPETW TDGPKDTSVE 

       190        200        210 
DALERTYVPR LKTLEEDVME AMGIQETRRF KKVYWY 

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Placenta, Small intestine, Stomach and Wolffian duct.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: Czech II and FVB/N.
Tissue: Mammary gland.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK003362 mRNA. Translation: BAB22737.1.
AK008117 mRNA. Translation: BAB25472.1.
AK008961 mRNA. Translation: BAB25991.1.
AK013394 mRNA. Translation: BAB28828.1.
AK019976 mRNA. Translation: BAB31945.1.
AK020157 mRNA. Translation: BAB32014.1.
AK167623 mRNA. Translation: BAE39675.1.
BC004736 mRNA. Translation: AAH04736.1.
BC025506 mRNA. Translation: AAH25506.1.
BC031730 mRNA. Translation: AAH31730.1.
CCDSCCDS38477.1.
RefSeqNP_080867.2. NM_026591.3.
XP_006502002.1. XM_006501939.1.
XP_006502003.1. XM_006501940.1.
XP_006502004.1. XM_006501941.1.
XP_006502005.1. XM_006501942.1.
UniGeneMm.393802.

3D structure databases

ProteinModelPortalQ9CQ06.
SMRQ9CQ06. Positions 53-155.
ModBaseSearch...
MobiDBSearch...

PTM databases

PhosphoSiteQ9CQ06.

Proteomic databases

MaxQBQ9CQ06.
PaxDbQ9CQ06.
PRIDEQ9CQ06.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000019854; ENSMUSP00000019854; ENSMUSG00000019710.
ENSMUST00000119968; ENSMUSP00000114111; ENSMUSG00000019710.
ENSMUST00000121048; ENSMUSP00000113959; ENSMUSG00000019710.
ENSMUST00000121920; ENSMUSP00000112885; ENSMUSG00000019710.
GeneID67707.
KEGGmmu:67707.
UCSCuc008ptd.1. mouse.

Organism-specific databases

CTD79590.
MGIMGI:1914957. Mrpl24.

Phylogenomic databases

eggNOGNOG325647.
GeneTreeENSGT00390000014542.
HOGENOMHOG000031326.
HOVERGENHBG093899.
InParanoidQ9CQ06.
KOK02895.
OMAGIQETRR.
OrthoDBEOG7JQBP1.
PhylomeDBQ9CQ06.
TreeFamTF105984.

Gene expression databases

BgeeQ9CQ06.
CleanExMM_MRPL24.
GenevestigatorQ9CQ06.

Family and domain databases

Gene3D2.30.30.30. 1 hit.
HAMAPMF_01326_B. Ribosomal_L24_B.
InterProIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERPTHR12903. PTHR12903. 1 hit.
PfamPF00467. KOW. 1 hit.
[Graphical view]
SMARTSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMSSF50104. SSF50104. 1 hit.
TIGRFAMsTIGR01079. rplX_bact. 1 hit.
PROSITEPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio325321.
PROQ9CQ06.
SOURCESearch...

Entry information

Entry nameRM24_MOUSE
AccessionPrimary (citable) accession number: Q9CQ06
Secondary accession number(s): Q9CX51, Q9D1L7, Q9D7R6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot