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Q9CPX7

- RT16_MOUSE

UniProt

Q9CPX7 - RT16_MOUSE

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Protein
28S ribosomal protein S16, mitochondrial
Gene
Mrps16, Rpms16
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
28S ribosomal protein S16, mitochondrial
Short name:
MRP-S16
Short name:
S16mt
Gene namesi
Name:Mrps16
Synonyms:Rpms16
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 14

Organism-specific databases

MGIiMGI:1913492. Mrps16.

Subcellular locationi

Mitochondrion By similarity UniRule annotation

GO - Cellular componenti

  1. mitochondrial small ribosomal subunit Source: Ensembl
  2. mitochondrion Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 3434Mitochondrion Reviewed prediction
Add
BLAST
Chaini35 – 13510128S ribosomal protein S16, mitochondrialUniRule annotation
PRO_0000030619Add
BLAST

Proteomic databases

PaxDbiQ9CPX7.
PRIDEiQ9CPX7.

PTM databases

PhosphoSiteiQ9CPX7.

Expressioni

Gene expression databases

BgeeiQ9CPX7.
CleanExiMM_MRPS16.
GenevestigatoriQ9CPX7.

Interactioni

Subunit structurei

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000055619.

Structurei

3D structure databases

ProteinModelPortaliQ9CPX7.
SMRiQ9CPX7. Positions 17-91.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG0228.
GeneTreeiENSGT00390000014309.
HOGENOMiHOG000246720.
HOVERGENiHBG017758.
InParanoidiQ9CPX7.
KOiK02959.
OMAiHPMTITE.
OrthoDBiEOG7P02KX.
PhylomeDBiQ9CPX7.
TreeFamiTF105637.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9CPX7-1 [UniParc]FASTAAdd to Basket

« Hide

MVQLTTIFCK AYHGGHLTIR LALGGCTNRP FYRIVAAHNK CPRDGRFVEQ    50
LGSYDPLPNS HGEKLVALNL DRIRHWIGCG AHLSKPMEKL LGLSGFFPLH 100
PMMITNAERL RRRRAREVLL ASQKAESEAK ETEAS 135
Length:135
Mass (Da):15,192
Last modified:April 27, 2001 - v1
Checksum:iEBA2A7209177B50C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049949 mRNA. Translation: BAB41002.1.
AK019243 mRNA. Translation: BAB31623.1.
AK005206 mRNA. Translation: BAB23884.1.
BC024656 mRNA. Translation: AAH24656.1.
CCDSiCCDS36817.1.
RefSeqiNP_079716.1. NM_025440.2.
UniGeneiMm.23747.

Genome annotation databases

EnsembliENSMUST00000061444; ENSMUSP00000055619; ENSMUSG00000049960.
GeneIDi66242.
KEGGimmu:66242.
UCSCiuc007sjp.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049949 mRNA. Translation: BAB41002.1 .
AK019243 mRNA. Translation: BAB31623.1 .
AK005206 mRNA. Translation: BAB23884.1 .
BC024656 mRNA. Translation: AAH24656.1 .
CCDSi CCDS36817.1.
RefSeqi NP_079716.1. NM_025440.2.
UniGenei Mm.23747.

3D structure databases

ProteinModelPortali Q9CPX7.
SMRi Q9CPX7. Positions 17-91.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000055619.

PTM databases

PhosphoSitei Q9CPX7.

Proteomic databases

PaxDbi Q9CPX7.
PRIDEi Q9CPX7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000061444 ; ENSMUSP00000055619 ; ENSMUSG00000049960 .
GeneIDi 66242.
KEGGi mmu:66242.
UCSCi uc007sjp.1. mouse.

Organism-specific databases

CTDi 51021.
MGIi MGI:1913492. Mrps16.

Phylogenomic databases

eggNOGi COG0228.
GeneTreei ENSGT00390000014309.
HOGENOMi HOG000246720.
HOVERGENi HBG017758.
InParanoidi Q9CPX7.
KOi K02959.
OMAi HPMTITE.
OrthoDBi EOG7P02KX.
PhylomeDBi Q9CPX7.
TreeFami TF105637.

Miscellaneous databases

NextBioi 321067.
PROi Q9CPX7.
SOURCEi Search...

Gene expression databases

Bgeei Q9CPX7.
CleanExi MM_MRPS16.
Genevestigatori Q9CPX7.

Family and domain databases

Gene3Di 3.30.1320.10. 1 hit.
HAMAPi MF_00385. Ribosomal_S16.
InterProi IPR000307. Ribosomal_S16.
IPR023803. Ribosomal_S16_dom.
[Graphical view ]
PANTHERi PTHR12919. PTHR12919. 1 hit.
Pfami PF00886. Ribosomal_S16. 1 hit.
[Graphical view ]
SUPFAMi SSF54565. SSF54565. 1 hit.
TIGRFAMsi TIGR00002. S16. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28S small subunit."
    Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
    J. Biol. Chem. 276:33181-33195(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Cerebellum and Embryo.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Mammary tumor.

Entry informationi

Entry nameiRT16_MOUSE
AccessioniPrimary (citable) accession number: Q9CPX7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: July 9, 2014
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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