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Q9CPX7

- RT16_MOUSE

UniProt

Q9CPX7 - RT16_MOUSE

Protein

28S ribosomal protein S16, mitochondrial

Gene

Mrps16

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    28S ribosomal protein S16, mitochondrial
    Short name:
    MRP-S16
    Short name:
    S16mt
    Gene namesi
    Name:Mrps16
    Synonyms:Rpms16
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 14

    Organism-specific databases

    MGIiMGI:1913492. Mrps16.

    Subcellular locationi

    Mitochondrion By similarity

    GO - Cellular componenti

    1. mitochondrial small ribosomal subunit Source: Ensembl
    2. mitochondrion Source: MGI

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 3434MitochondrionSequence AnalysisAdd
    BLAST
    Chaini35 – 13510128S ribosomal protein S16, mitochondrialPRO_0000030619Add
    BLAST

    Proteomic databases

    PaxDbiQ9CPX7.
    PRIDEiQ9CPX7.

    PTM databases

    PhosphoSiteiQ9CPX7.

    Expressioni

    Gene expression databases

    BgeeiQ9CPX7.
    CleanExiMM_MRPS16.
    GenevestigatoriQ9CPX7.

    Interactioni

    Subunit structurei

    Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000055619.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9CPX7.
    SMRiQ9CPX7. Positions 17-91.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S16P family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG0228.
    GeneTreeiENSGT00390000014309.
    HOGENOMiHOG000246720.
    HOVERGENiHBG017758.
    InParanoidiQ9CPX7.
    KOiK02959.
    OMAiHPMTITE.
    OrthoDBiEOG7P02KX.
    PhylomeDBiQ9CPX7.
    TreeFamiTF105637.

    Family and domain databases

    Gene3Di3.30.1320.10. 1 hit.
    HAMAPiMF_00385. Ribosomal_S16.
    InterProiIPR000307. Ribosomal_S16.
    IPR023803. Ribosomal_S16_dom.
    [Graphical view]
    PANTHERiPTHR12919. PTHR12919. 1 hit.
    PfamiPF00886. Ribosomal_S16. 1 hit.
    [Graphical view]
    SUPFAMiSSF54565. SSF54565. 1 hit.
    TIGRFAMsiTIGR00002. S16. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9CPX7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVQLTTIFCK AYHGGHLTIR LALGGCTNRP FYRIVAAHNK CPRDGRFVEQ    50
    LGSYDPLPNS HGEKLVALNL DRIRHWIGCG AHLSKPMEKL LGLSGFFPLH 100
    PMMITNAERL RRRRAREVLL ASQKAESEAK ETEAS 135
    Length:135
    Mass (Da):15,192
    Last modified:April 27, 2001 - v1
    Checksum:iEBA2A7209177B50C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB049949 mRNA. Translation: BAB41002.1.
    AK019243 mRNA. Translation: BAB31623.1.
    AK005206 mRNA. Translation: BAB23884.1.
    BC024656 mRNA. Translation: AAH24656.1.
    CCDSiCCDS36817.1.
    RefSeqiNP_079716.1. NM_025440.2.
    UniGeneiMm.23747.

    Genome annotation databases

    EnsembliENSMUST00000061444; ENSMUSP00000055619; ENSMUSG00000049960.
    GeneIDi66242.
    KEGGimmu:66242.
    UCSCiuc007sjp.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB049949 mRNA. Translation: BAB41002.1 .
    AK019243 mRNA. Translation: BAB31623.1 .
    AK005206 mRNA. Translation: BAB23884.1 .
    BC024656 mRNA. Translation: AAH24656.1 .
    CCDSi CCDS36817.1.
    RefSeqi NP_079716.1. NM_025440.2.
    UniGenei Mm.23747.

    3D structure databases

    ProteinModelPortali Q9CPX7.
    SMRi Q9CPX7. Positions 17-91.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000055619.

    PTM databases

    PhosphoSitei Q9CPX7.

    Proteomic databases

    PaxDbi Q9CPX7.
    PRIDEi Q9CPX7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000061444 ; ENSMUSP00000055619 ; ENSMUSG00000049960 .
    GeneIDi 66242.
    KEGGi mmu:66242.
    UCSCi uc007sjp.1. mouse.

    Organism-specific databases

    CTDi 51021.
    MGIi MGI:1913492. Mrps16.

    Phylogenomic databases

    eggNOGi COG0228.
    GeneTreei ENSGT00390000014309.
    HOGENOMi HOG000246720.
    HOVERGENi HBG017758.
    InParanoidi Q9CPX7.
    KOi K02959.
    OMAi HPMTITE.
    OrthoDBi EOG7P02KX.
    PhylomeDBi Q9CPX7.
    TreeFami TF105637.

    Miscellaneous databases

    NextBioi 321067.
    PROi Q9CPX7.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q9CPX7.
    CleanExi MM_MRPS16.
    Genevestigatori Q9CPX7.

    Family and domain databases

    Gene3Di 3.30.1320.10. 1 hit.
    HAMAPi MF_00385. Ribosomal_S16.
    InterProi IPR000307. Ribosomal_S16.
    IPR023803. Ribosomal_S16_dom.
    [Graphical view ]
    PANTHERi PTHR12919. PTHR12919. 1 hit.
    Pfami PF00886. Ribosomal_S16. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54565. SSF54565. 1 hit.
    TIGRFAMsi TIGR00002. S16. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28S small subunit."
      Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
      J. Biol. Chem. 276:33181-33195(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Cerebellum and Embryo.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Mammary tumor.

    Entry informationi

    Entry nameiRT16_MOUSE
    AccessioniPrimary (citable) accession number: Q9CPX7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 27, 2001
    Last sequence update: April 27, 2001
    Last modified: October 1, 2014
    This is version 104 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3