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Q9CPS5 (Q9CPS5_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Psmd8 MGI 1888669 Ensembl ENSMUSP00000138613
OrganismMus musculus (Mouse) [Reference proteome] EMBL BAB22789.2
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q9CPS5 [UniParc].

Last modified July 5, 2004. Version 2.
Checksum: 2D61CFE344475C55

FASTA28932,769
        10         20         30         40         50         60 
MAATAATVNG STTVSSSGPA ATSVGILQAA AGMYEQLKDE WNRKNPNLSK CGEELGRLKL 

        70         80         90        100        110        120 
VLLELNFLPT TGTKLTKQQL ILARDILEIG AQWSILCKDI PSFERYMAQL KCYYFDYKEQ 

       130        140        150        160        170        180 
LPESAYMHQL LGLNLLFLLS QNRVAEFHTE LERLPAKDIQ TNVYIKHPVS LEQYLMEGSY 

       190        200        210        220        230        240 
NKVFLAKGNI PAESYTFFID ILLDTIRDEI AGCIEKAYEK ILFAEATRIL FFSTPKKMTD 

       250        260        270        280 
YAKKRGWVLG PNNYYSFASQ QQKPEDSTIP STELAKQVIE YARQLEMIV 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[4]Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F. expand/collapse author list , Imotani K., Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[5]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[6]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC25683.1.
Tissue: Whole body EMBL BAC25683.1.
[7]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[8]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE29609.1.
Tissue: Bone marrow EMBL BAE29609.1.
[9]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE38968.1.
[10]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[11]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAB22789.2.
Tissue: Bone marrow EMBL BAE29609.1, Kidney EMBL BAB22458.2 and Whole body EMBL BAB22789.2.
[12]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000138613.
[13]Ensembl
Submitted (JUL-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000138613.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC164564 Genomic DNA. No translation available.
AK002921 mRNA. Translation: BAB22458.2.
AK003436 mRNA. Translation: BAB22789.2.
AK027973 mRNA. Translation: BAC25683.1.
AK150493 mRNA. Translation: BAE29609.1.
AK150982 mRNA. Translation: BAE30009.1.
AK159216 mRNA. Translation: BAE34905.1.
AK166718 mRNA. Translation: BAE38968.1.
RefSeqNP_080821.3. NM_026545.3.
UniGeneMm.273152.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

MINTMINT-4124642.

Protocols and materials databases

DNASU57296.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000182328; ENSMUSP00000138613; ENSMUSG00000030591.
GeneID57296.
KEGGmmu:57296.

Organism-specific databases

CTD5714.
MGIMGI:1888669. Psmd8.

Phylogenomic databases

GeneTreeENSGT00390000014682.
HOVERGENHBG024389.
InParanoidQ9CPS5.
KOK03031.

Gene expression databases

GenevestigatorQ9CPS5.

Family and domain databases

InterProIPR006746. 26S_Psome_Rpn12.
[Graphical view]
PANTHERPTHR12387. PTHR12387. 1 hit.
ProtoNetSearch...

Other

NextBio313655.
SOURCESearch...

Entry information

Entry nameQ9CPS5_MOUSE
AccessionPrimary (citable) accession number: Q9CPS5
Secondary accession number(s): Q8BMV2
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: July 5, 2004
Last modified: January 22, 2014
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)