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Protein

Pentatricopeptide repeat-containing protein At1g63150

Gene

At1g63150

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g63150
Gene namesi
Ordered Locus Names:At1g63150
ORF Names:F16M19.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G63150.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003428411 – 629Pentatricopeptide repeat-containing protein At1g63150Add BLAST629

Proteomic databases

PaxDbiQ9CAM8.

Expressioni

Gene expression databases

GenevisibleiQ9CAM8. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G63150.1.

Structurei

3D structure databases

ProteinModelPortaliQ9CAM8.
SMRiQ9CAM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati46 – 81PPR 1Add BLAST36
Repeati82 – 116PPR 2Add BLAST35
Repeati117 – 151PPR 3Add BLAST35
Repeati152 – 186PPR 4Add BLAST35
Repeati187 – 221PPR 5Add BLAST35
Repeati222 – 256PPR 6Add BLAST35
Repeati257 – 291PPR 7Add BLAST35
Repeati292 – 326PPR 8Add BLAST35
Repeati327 – 361PPR 9Add BLAST35
Repeati362 – 396PPR 10Add BLAST35
Repeati397 – 431PPR 11Add BLAST35
Repeati432 – 466PPR 12Add BLAST35
Repeati467 – 501PPR 13Add BLAST35
Repeati502 – 532PPR 14Add BLAST31
Repeati534 – 568PPR 15Add BLAST35
Repeati569 – 603PPR 16Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 16 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9CAM8.
OMAiEMELNIF.
OrthoDBiEOG093606HI.
PhylomeDBiQ9CAM8.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 3 hits.
PF13041. PPR_2. 6 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9CAM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY
60 70 80 90 100
REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
110 120 130 140 150
LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE
160 170 180 190 200
PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
210 220 230 240 250
HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALNLLNKME
260 270 280 290 300
AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI
310 320 330 340 350
NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL
360 370 380 390 400
HEEMIQRSID PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT
410 420 430 440 450
YNTLINGFCK CKRVEDGVEL FREMSQRGLV GNTVTYTTII QGFFQAGDCD
460 470 480 490 500
SAQMVFKQMV SNRVPTDIMT YSILLHGLCS YGKLDTALVI FKYLQKSEME
510 520 530 540 550
LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT MISGLCSKRL
560 570 580 590 600
LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG
610 620
FVGDASTISL VTNMLHDGRL DKSFLNMLS
Length:629
Mass (Da):70,790
Last modified:June 1, 2001 - v1
Checksum:i2968C7BD1C9A1D5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010795 Genomic DNA. Translation: AAG51611.1.
CP002684 Genomic DNA. Translation: AEE34062.1.
AY056252 mRNA. Translation: AAL07101.1.
BT000997 mRNA. Translation: AAN41397.1.
PIRiA96657.
RefSeqiNP_564809.1. NM_104993.2.
UniGeneiAt.26348.
At.75283.

Genome annotation databases

EnsemblPlantsiAT1G63150.1; AT1G63150.1; AT1G63150.
GeneIDi842619.
GrameneiAT1G63150.1; AT1G63150.1; AT1G63150.
KEGGiath:AT1G63150.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010795 Genomic DNA. Translation: AAG51611.1.
CP002684 Genomic DNA. Translation: AEE34062.1.
AY056252 mRNA. Translation: AAL07101.1.
BT000997 mRNA. Translation: AAN41397.1.
PIRiA96657.
RefSeqiNP_564809.1. NM_104993.2.
UniGeneiAt.26348.
At.75283.

3D structure databases

ProteinModelPortaliQ9CAM8.
SMRiQ9CAM8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G63150.1.

Proteomic databases

PaxDbiQ9CAM8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G63150.1; AT1G63150.1; AT1G63150.
GeneIDi842619.
GrameneiAT1G63150.1; AT1G63150.1; AT1G63150.
KEGGiath:AT1G63150.

Organism-specific databases

TAIRiAT1G63150.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9CAM8.
OMAiEMELNIF.
OrthoDBiEOG093606HI.
PhylomeDBiQ9CAM8.

Miscellaneous databases

PROiQ9CAM8.

Gene expression databases

GenevisibleiQ9CAM8. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 3 hits.
PF13041. PPR_2. 6 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP100_ARATH
AccessioniPrimary (citable) accession number: Q9CAM8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 2001
Last modified: November 30, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.