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Protein

Pentatricopeptide repeat-containing protein At1g63150

Gene

At1g63150

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g63150
Gene namesi
Ordered Locus Names:At1g63150
ORF Names:F16M19.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G63150.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 629629Pentatricopeptide repeat-containing protein At1g63150PRO_0000342841Add
BLAST

Proteomic databases

PaxDbiQ9CAM8.
PRIDEiQ9CAM8.

Expressioni

Gene expression databases

GenevisibleiQ9CAM8. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G63150.1.

Structurei

3D structure databases

ProteinModelPortaliQ9CAM8.
SMRiQ9CAM8. Positions 58-619.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati46 – 8136PPR 1Add
BLAST
Repeati82 – 11635PPR 2Add
BLAST
Repeati117 – 15135PPR 3Add
BLAST
Repeati152 – 18635PPR 4Add
BLAST
Repeati187 – 22135PPR 5Add
BLAST
Repeati222 – 25635PPR 6Add
BLAST
Repeati257 – 29135PPR 7Add
BLAST
Repeati292 – 32635PPR 8Add
BLAST
Repeati327 – 36135PPR 9Add
BLAST
Repeati362 – 39635PPR 10Add
BLAST
Repeati397 – 43135PPR 11Add
BLAST
Repeati432 – 46635PPR 12Add
BLAST
Repeati467 – 50135PPR 13Add
BLAST
Repeati502 – 53231PPR 14Add
BLAST
Repeati534 – 56835PPR 15Add
BLAST
Repeati569 – 60335PPR 16Add
BLAST

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 16 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9CAM8.
OMAiEMELNIF.
PhylomeDBiQ9CAM8.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 3 hits.
PF13041. PPR_2. 6 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9CAM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY
60 70 80 90 100
REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
110 120 130 140 150
LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE
160 170 180 190 200
PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
210 220 230 240 250
HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALNLLNKME
260 270 280 290 300
AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI
310 320 330 340 350
NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL
360 370 380 390 400
HEEMIQRSID PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT
410 420 430 440 450
YNTLINGFCK CKRVEDGVEL FREMSQRGLV GNTVTYTTII QGFFQAGDCD
460 470 480 490 500
SAQMVFKQMV SNRVPTDIMT YSILLHGLCS YGKLDTALVI FKYLQKSEME
510 520 530 540 550
LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT MISGLCSKRL
560 570 580 590 600
LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG
610 620
FVGDASTISL VTNMLHDGRL DKSFLNMLS
Length:629
Mass (Da):70,790
Last modified:June 1, 2001 - v1
Checksum:i2968C7BD1C9A1D5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010795 Genomic DNA. Translation: AAG51611.1.
CP002684 Genomic DNA. Translation: AEE34062.1.
AY056252 mRNA. Translation: AAL07101.1.
BT000997 mRNA. Translation: AAN41397.1.
PIRiA96657.
RefSeqiNP_564809.1. NM_104993.1.
UniGeneiAt.26348.
At.75283.

Genome annotation databases

EnsemblPlantsiAT1G63150.1; AT1G63150.1; AT1G63150.
GeneIDi842619.
GrameneiAT1G63150.1; AT1G63150.1; AT1G63150.
KEGGiath:AT1G63150.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010795 Genomic DNA. Translation: AAG51611.1.
CP002684 Genomic DNA. Translation: AEE34062.1.
AY056252 mRNA. Translation: AAL07101.1.
BT000997 mRNA. Translation: AAN41397.1.
PIRiA96657.
RefSeqiNP_564809.1. NM_104993.1.
UniGeneiAt.26348.
At.75283.

3D structure databases

ProteinModelPortaliQ9CAM8.
SMRiQ9CAM8. Positions 58-619.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G63150.1.

Proteomic databases

PaxDbiQ9CAM8.
PRIDEiQ9CAM8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G63150.1; AT1G63150.1; AT1G63150.
GeneIDi842619.
GrameneiAT1G63150.1; AT1G63150.1; AT1G63150.
KEGGiath:AT1G63150.

Organism-specific databases

TAIRiAT1G63150.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9CAM8.
OMAiEMELNIF.
PhylomeDBiQ9CAM8.

Miscellaneous databases

PROiQ9CAM8.

Gene expression databases

GenevisibleiQ9CAM8. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 3 hits.
PF13041. PPR_2. 6 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP100_ARATH
AccessioniPrimary (citable) accession number: Q9CAM8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 2001
Last modified: February 17, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.