Q9CAF6 (GYRA_ARATH) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 86.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Probable DNA gyrase subunit A, chloroplastic/mitochondrial EC=5.99.1.3 | ||||||
| Gene names |
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| Organism | Arabidopsis thaliana (Mouse-ear cress) [Reference proteome] | ||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis![]() |
Protein attributes
| Sequence length | 950 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. Ref.3 |
| Catalytic activity | ATP-dependent breakage, passage and rejoining of double-stranded DNA. |
| Subunit structure | Made up of two chains. The A chain is responsible for DNA breakage and rejoining; the B chain catalyzes ATP hydrolysis By similarity. Associated with the mediator complex. Ref.4 |
| Subcellular location | Plastid › chloroplast. Mitochondrion. Nucleus Probable Ref.3. |
| Sequence similarities | Belongs to the topoisomerase GyrA/ParC subunit family. |
| Sequence caution | The sequence AAF19580.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence AAG51377.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – ? | Chloroplast and mitochondrion | |||||||
| Chain | ? – 950 | Probable DNA gyrase subunit A, chloroplastic/mitochondrial | PRO_0000247945 | ||||||
Sites | |||||||||
| Active site | 215 | 1 | O-(5'-phospho-DNA)-tyrosine intermediate By similarity | ||||||
Sequences
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References
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC011560 Genomic DNA. Translation: AAG51377.1. Sequence problems. AC011708 Genomic DNA. Translation: AAF19580.1. Sequence problems. CP002686 Genomic DNA. Translation: AEE74943.1. |
| IPI | IPI00544444. |
| RefSeq | NP_187680.2. NM_111905.2. |
| UniGene | At.39883. |
3D structure databases | |
| ProteinModelPortal | Q9CAF6. |
| SMR | Q9CAF6. Positions 117-915. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9CAF6. 1 interaction. |
| STRING | 3702.AT3G10690.1-P. |
Proteomic databases | |
| PaxDb | Q9CAF6. |
| PRIDE | Q9CAF6. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT3G10690.1; AT3G10690.1; AT3G10690. |
| GeneID | 820238. |
| KEGG | ath:AT3G10690. |
Organism-specific databases | |
| GeneFarm | 2654. 246. |
| TAIR | At3g10690. |
Phylogenomic databases | |
| eggNOG | COG0188. |
| HOGENOM | HOG000076278. |
| InParanoid | Q9CAF6. |
| KO | K02469. |
| OMA | IAQEDVV. |
| PhylomeDB | Q9CAF6. |
| ProtClustDB | CLSN2690844. |
Gene expression databases | |
| Genevestigator | Q9CAF6. |
| GermOnline | AT3G10690. Arabidopsis thaliana. |
Family and domain databases | |
| Gene3D | 3.30.1360.40. 1 hit. 3.90.199.10. 2 hits. |
| InterPro | IPR024946. Arg_repress_C-like. IPR005743. GyrA. IPR006691. GyrA/parC_pinwhl. IPR002205. Topo_IIA_A/C. IPR013758. Topo_IIA_A/C_ab. IPR013760. Topo_IIA_like_dom. [Graphical view] |
| Pfam | PF03989. DNA_gyraseA_C. 6 hits. PF00521. DNA_topoisoIV. 1 hit. [Graphical view] |
| SMART | SM00434. TOP4c. 1 hit. [Graphical view] |
| SUPFAM | SSF56719. Topo_IIA_cen. 1 hit. |
| TIGRFAMs | TIGR01063. gyrA. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | GYRA_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q9CAF6 Secondary accession number(s): Q9SG75 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with
