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Protein
Submitted name:

Tetratricopeptide repeat (TPR)-like superfamily protein

Gene

TPR12

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Tetratricopeptide repeat (TPR)-like superfamily proteinImported
Gene namesi
Name:TPR12Imported
Synonyms:tetratricopeptide repeat 12Imported
Ordered Locus Names:At1g78120Imported
ORF Names:T11I11.6Imported, T11I11_6Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G78120
TAIRilocus:2194739 AT1G78120

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

ExpressionAtlasiQ9C9S0 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G78120.1

Structurei

3D structure databases

SMRiQ9C9S0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini159 – 495TPR_REGIONInterPro annotationAdd BLAST337
Repeati159 – 192TPRPROSITE-ProRule annotationAdd BLAST34
Repeati193 – 226TPRPROSITE-ProRule annotationAdd BLAST34
Repeati227 – 260TPRPROSITE-ProRule annotationAdd BLAST34
Repeati348 – 381TPRPROSITE-ProRule annotationAdd BLAST34
Repeati394 – 427TPRPROSITE-ProRule annotationAdd BLAST34
Repeati428 – 461TPRPROSITE-ProRule annotationAdd BLAST34
Repeati462 – 495TPRPROSITE-ProRule annotationAdd BLAST34

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili226 – 246Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, TPR repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1124 Eukaryota
COG0457 LUCA
OMAiQKGTKRF
OrthoDBiEOG093609JW

Family and domain databases

Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat
PfamiView protein in Pfam
PF13181 TPR_8, 1 hit
SMARTiView protein in SMART
SM00028 TPR, 8 hits
SUPFAMiSSF48452 SSF48452, 3 hits
PROSITEiView protein in PROSITE
PS50005 TPR, 7 hits
PS50293 TPR_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

Q9C9S0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS
60 70 80 90 100
STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
110 120 130 140 150
SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG
160 170 180 190 200
KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
210 220 230 240 250
AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY
260 270 280 290 300
NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
310 320 330 340 350
SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL
360 370 380 390 400
LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
410 420 430 440 450
GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED
460 470 480 490 500
CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
510 520 530
ALTEVNVRFK KQTGGDVRFK GVGSELVVAN
Length:530
Mass (Da):59,620
Last modified:June 1, 2001 - v1
Checksum:i95010FA96B4F3260
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC012680 Genomic DNA Translation: AAG52100.1
CP002684 Genomic DNA Translation: AEE36069.1
PIRiD96810
RefSeqiNP_177936.1, NM_106462.3
UniGeneiAt.34337

Genome annotation databases

EnsemblPlantsiAT1G78120.1; AT1G78120.1; AT1G78120
GeneIDi844148
GrameneiAT1G78120.1; AT1G78120.1; AT1G78120

Similar proteinsi

Entry informationi

Entry nameiQ9C9S0_ARATH
AccessioniPrimary (citable) accession number: Q9C9S0
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: May 23, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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