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Protein

Probable histone chaperone ASF1A

Gene

ASF1A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly (By similarity). While encoded by a region of the Arabidopsis thaliana genome that is homologous to the Brassica S-locus for self incompatibility, this protein may not play the same role in Arabidopsis thaliana.By similarity

GO - Biological processi

  • cell division Source: TAIR
  • chromatin assembly or disassembly Source: InterPro
  • chromatin modification Source: UniProtKB-KW
  • double-strand break repair via homologous recombination Source: TAIR
  • mitotic cell size control checkpoint Source: TAIR
  • regulation of cell size Source: TAIR
  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • transcription, DNA-templated Source: UniProtKB-KW
  • trichome branching Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Chaperone, Chromatin regulator

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Probable histone chaperone ASF1A
Alternative name(s):
Anti-silencing function protein 1-like protein a
Short name:
Anti-silencing function 1a protein
S-locus protein 7
Short name:
AtSP7
Silencing group A protein 2
Gene namesi
Name:ASF1A
Synonyms:SGA2, SP7
Ordered Locus Names:At1g66740
ORF Names:F4N21.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G66740.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: TAIR
  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 196196Probable histone chaperone ASF1APRO_0000270797Add
BLAST

Proteomic databases

PaxDbiQ9C9M6.
PRIDEiQ9C9M6.

Expressioni

Tissue specificityi

Expressed in leaves and flower buds.1 Publication

Gene expression databases

GenevisibleiQ9C9M6. AT.

Interactioni

Subunit structurei

Interacts with histone H3 and histone H4.By similarity

Protein-protein interaction databases

BioGridi28213. 1 interaction.
STRINGi3702.AT1G66740.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C9M6.
SMRiQ9C9M6. Positions 1-153.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ASF1 family.Curated

Phylogenomic databases

eggNOGiKOG3265. Eukaryota.
COG5137. LUCA.
HOGENOMiHOG000197425.
InParanoidiQ9C9M6.
KOiK10753.
OMAiFIFQADA.
PhylomeDBiQ9C9M6.

Family and domain databases

Gene3Di2.60.40.1490. 1 hit.
InterProiIPR006818. ASF1-like.
[Graphical view]
PANTHERiPTHR12040. PTHR12040. 1 hit.
PfamiPF04729. ASF1_hist_chap. 1 hit.
[Graphical view]
SUPFAMiSSF101546. SSF101546. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9C9M6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAIKITNVA VLHNPAPFVS PFQFEISYEC LNSLKDDLEW KLIYVGSAED
60 70 80 90 100
ETYDQLLESV LVGPVNVGNY RFVFQADPPD PSKIQEEDII GVTVLLLTCS
110 120 130 140 150
YMGQEFLRVG YYVNNDYEDE QLKEEPPTKV LIDKVQRNIL SDKPRVTKFP
160 170 180 190
IDFHPEEEQT AATAAPPEQS DEQQPNVNGE AQVLPDQSVE PKPEES
Length:196
Mass (Da):22,133
Last modified:June 1, 2001 - v1
Checksum:i259D9842EA77F115
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB078339 mRNA. Translation: BAC54103.1.
AC013288 Genomic DNA. Translation: AAG60078.1.
CP002684 Genomic DNA. Translation: AEE34550.1.
AY096540 mRNA. Translation: AAM20190.1.
AY065298 mRNA. Translation: AAL38774.1.
RefSeqiNP_176846.1. NM_105344.3.
UniGeneiAt.28464.

Genome annotation databases

EnsemblPlantsiAT1G66740.1; AT1G66740.1; AT1G66740.
GeneIDi842992.
GrameneiAT1G66740.1; AT1G66740.1; AT1G66740.
KEGGiath:AT1G66740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB078339 mRNA. Translation: BAC54103.1.
AC013288 Genomic DNA. Translation: AAG60078.1.
CP002684 Genomic DNA. Translation: AEE34550.1.
AY096540 mRNA. Translation: AAM20190.1.
AY065298 mRNA. Translation: AAL38774.1.
RefSeqiNP_176846.1. NM_105344.3.
UniGeneiAt.28464.

3D structure databases

ProteinModelPortaliQ9C9M6.
SMRiQ9C9M6. Positions 1-153.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi28213. 1 interaction.
STRINGi3702.AT1G66740.1.

Proteomic databases

PaxDbiQ9C9M6.
PRIDEiQ9C9M6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G66740.1; AT1G66740.1; AT1G66740.
GeneIDi842992.
GrameneiAT1G66740.1; AT1G66740.1; AT1G66740.
KEGGiath:AT1G66740.

Organism-specific databases

TAIRiAT1G66740.

Phylogenomic databases

eggNOGiKOG3265. Eukaryota.
COG5137. LUCA.
HOGENOMiHOG000197425.
InParanoidiQ9C9M6.
KOiK10753.
OMAiFIFQADA.
PhylomeDBiQ9C9M6.

Miscellaneous databases

PROiQ9C9M6.

Gene expression databases

GenevisibleiQ9C9M6. AT.

Family and domain databases

Gene3Di2.60.40.1490. 1 hit.
InterProiIPR006818. ASF1-like.
[Graphical view]
PANTHERiPTHR12040. PTHR12040. 1 hit.
PfamiPF04729. ASF1_hist_chap. 1 hit.
[Graphical view]
SUPFAMiSSF101546. SSF101546. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Arabidopsis thaliana ASF1 genes."
    Kaya H., Lee J., Araki T., Shibahara K.
    Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Characterization of expressed genes in the SLL2 region of self-compatible Arabidopsis thaliana."
    Takada Y., Ito A., Ninomiya C., Kakizaki T., Takahata Y., Suzuki G., Hatakeyama K., Hinata K., Shiba H., Takayama S., Isogai A., Watanabe M.
    DNA Res. 8:215-219(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiASF1A_ARATH
AccessioniPrimary (citable) accession number: Q9C9M6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: June 1, 2001
Last modified: April 13, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.