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Protein
Submitted name:

Protein agamous-like 55

Gene

T7P1.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Protein agamous-like 55Imported
Submitted name:
Putative uncharacterized protein T7P1.6Imported
Gene namesi
Name:T7P1.6Imported
Synonyms:AGL55Imported
Ordered Locus Names:At1g60920Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G60920.

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

IntActiQ9C960. 6 interactors.
STRINGi3702.AT1G60920.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 40MADS-boxInterPro annotationAdd BLAST38

Sequence similaritiesi

Contains 1 MADS-box domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000152226.
OMAiWWEDQAF.
OrthoDBiEOG093617IN.

Family and domain databases

CDDicd00266. MADS_SRF_like. 1 hit.
InterProiIPR033897. MADS_SRF-like.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C960-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA
60 70 80 90 100
TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
110 120 130 140 150
QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE
160 170 180 190
EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y
Length:191
Mass (Da):21,501
Last modified:June 1, 2001 - v1
Checksum:iBF92CEBA222421D1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC018908 Genomic DNA. Translation: AAG51643.1.
CP002684 Genomic DNA. Translation: AEE33748.1.
PIRiF96634.
RefSeqiNP_176288.1. NM_104772.2.
UniGeneiAt.64874.

Genome annotation databases

EnsemblPlantsiAT1G60920.1; AT1G60920.1; AT1G60920.
GeneIDi842383.
GrameneiAT1G60920.1; AT1G60920.1; AT1G60920.
KEGGiath:AT1G60920.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC018908 Genomic DNA. Translation: AAG51643.1.
CP002684 Genomic DNA. Translation: AEE33748.1.
PIRiF96634.
RefSeqiNP_176288.1. NM_104772.2.
UniGeneiAt.64874.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9C960. 6 interactors.
STRINGi3702.AT1G60920.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G60920.1; AT1G60920.1; AT1G60920.
GeneIDi842383.
GrameneiAT1G60920.1; AT1G60920.1; AT1G60920.
KEGGiath:AT1G60920.

Organism-specific databases

TAIRiAT1G60920.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000152226.
OMAiWWEDQAF.
OrthoDBiEOG093617IN.

Family and domain databases

CDDicd00266. MADS_SRF_like. 1 hit.
InterProiIPR033897. MADS_SRF-like.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9C960_ARATH
AccessioniPrimary (citable) accession number: Q9C960
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: November 30, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.