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Q9C920 (Q9C920_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) EMBL AEE32875.1
Submitted name:
AT1G53000 protein EMBL BAH20217.1
Submitted name:
Putative CMP-KDO synthetase EMBL CAD43603.1
EC=2.7.7.38 EMBL CAD43603.1
Submitted name:
Putative deoxyoctulonosic acid synthetase; 116195-114393 EMBL AAG52266.1
Gene names
Name:F14G24.28 EMBL AAG52266.1
Synonyms:kdo1 EMBL CAD43603.1, KDSB EMBL AEE32875.1
Ordered Locus Names:At1g53000 TAIR At1g53000
ORF Names:AT1G53000 EMBL AEE32875.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL AAG52266.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length290 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9C920 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 7A6AE112A3D51E62

FASTA29032,245
        10         20         30         40         50         60 
MSVCSSSSSS QKTWIVNGIL AGTAIAAAIG ARAYLGRSKK FRSRVVGIIP ARYASSRFEG 

        70         80         90        100        110        120 
KPLVQILGKP MIQRTWERSK LATTLDHIVV ATDDERIAEC CRGFGADVIM TSESCRNGTE 

       130        140        150        160        170        180 
RCNEALEKLE KKYDVVVNIQ GDEPLIEPEI IDGVVKALQV TPDAVFSTAV TSLKPEDGLD 

       190        200        210        220        230        240 
PNRVKCVVDN RGYAIYFSRG LIPYNKSGKV NPDFPYMLHL GIQSFDSKFL KVYSELQPTP 

       250        260        270        280        290 
LQQEEDLEQL KVLENGYKMK VIKVDHEAHG VDTPDDVEKI ESLMRERNMS

« Hide

References

« Hide 'large scale' references
[1]"Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
DNA Res. 0:0-0(2009)
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Mixture of silique and flower EMBL BAH20217.1.
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]Town C.D., Kaul S.
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Arabidopsis thaliana chromosome 1 BAC F14G24 genomic sequence."
Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D., Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]"Cloning of Arabidopsis CMP-KDO synthetase."
Wilson I.B.H.
Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC019018 Genomic DNA. Translation: AAG52266.1.
CP002684 Genomic DNA. Translation: AEE32875.1.
AK317553 mRNA. Translation: BAH20217.1.
AJ505021 mRNA. Translation: CAD43603.1.
IPIIPI00529090.
RefSeqNP_175708.2. NM_104178.4.
UniGeneAt.18072.

3D structure databases

HSSPHSSP built from PDB template 1VH1 based on UniProtKB P04951.
ProteinModelPortalQ9C920.
SMRQ9C920. Positions 45-288.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9C920.

Proteomic databases

PRIDEQ9C920.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G53000.1; AT1G53000.1; AT1G53000.
GeneID841733.
KEGGath:AT1G53000.
NMPDRfig|3702.1.peg.4792.

Organism-specific databases

TAIRAt1g53000.

Phylogenomic databases

GeneTreeEPGT00050000019225.
InParanoidQ9C920.
OMAINVQADE.
PhylomeDBQ9C920.
ProtClustDBPLN02917.

Enzyme and pathway databases

BRENDA2.7.7.38. 302.

Gene expression databases

GenevestigatorQ9C920.

Family and domain databases

HAMAPMF_00057. CMP_KDO_synth.
[Tree]
InterProIPR003329. Cytidylyl_trans.
IPR004528. KdsB.
[Graphical view]
KOK00979.
PANTHERPTHR21485:SF4. PTHR21485:SF4. 1 hit.
PfamPF02348. CTP_transf_3. 1 hit.
[Graphical view]
TIGRFAMsTIGR00466. KdsB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9C920_ARATH
AccessionPrimary (citable) accession number: Q9C920
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: January 25, 2012
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info