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Protein

Probable calcium-binding protein CML23

Gene

CML23

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Potential calcium sensor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Calcium bindingi24 – 351PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi60 – 712PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi99 – 1103PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi135 – 1464PROSITE-ProRule annotationAdd BLAST12

GO - Molecular functioni

GO - Biological processi

  • regulation of flower development Source: TAIR
  • regulation of nitric oxide metabolic process Source: TAIR
Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable calcium-binding protein CML23
Alternative name(s):
Calmodulin-like protein 23
Gene namesi
Name:CML23
Ordered Locus Names:At1g66400
ORF Names:T27F4.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G66400.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003429521 – 157Probable calcium-binding protein CML23Add BLAST157

Proteomic databases

PaxDbiQ9C8Y1.

Expressioni

Gene expression databases

GenevisibleiQ9C8Y1. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G66400.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C8Y1.
SMRiQ9C8Y1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 46EF-hand 1PROSITE-ProRule annotationAdd BLAST36
Domaini47 – 82EF-hand 2PROSITE-ProRule annotationAdd BLAST36
Domaini86 – 121EF-hand 3PROSITE-ProRule annotationAdd BLAST36
Domaini122 – 157EF-hand 4PROSITE-ProRule annotationAdd BLAST36

Sequence similaritiesi

Contains 4 EF-hand domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
HOGENOMiHOG000233018.
InParanoidiQ9C8Y1.
KOiK13448.
OMAiNCLGSME.
OrthoDBiEOG09360QFU.
PhylomeDBiQ9C8Y1.

Family and domain databases

CDDicd00051. EFh. 2 hits.
Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 2 hits.
[Graphical view]
SMARTiSM00054. EFh. 4 hits.
[Graphical view]
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiPS00018. EF_HAND_1. 4 hits.
PS50222. EF_HAND_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C8Y1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKNVSRNCL GSMEDIKKVF QRFDKNNDGK ISIDELKDVI GALSPNASQE
60 70 80 90 100
ETKAMMKEFD LDGNGFIDLD EFVALFQISD QSSNNSAIRD LKEAFDLYDL
110 120 130 140 150
DRNGRISANE LHSVMKNLGE KCSIQDCQRM INKVDSDGDG CVDFEEFKKM

MMINGSA
Length:157
Mass (Da):17,654
Last modified:June 1, 2001 - v1
Checksum:i5D6283AE37424C68
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti132N → S in AAM67124 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC020665 Genomic DNA. Translation: AAG52166.1.
CP002684 Genomic DNA. Translation: AEE34504.1.
AY063853 mRNA. Translation: AAL36209.1.
AY117325 mRNA. Translation: AAM51400.1.
AY088814 mRNA. Translation: AAM67124.1.
PIRiD96689.
RefSeqiNP_564874.1. NM_105311.3.
UniGeneiAt.27176.

Genome annotation databases

EnsemblPlantsiAT1G66400.1; AT1G66400.1; AT1G66400.
GeneIDi842958.
GrameneiAT1G66400.1; AT1G66400.1; AT1G66400.
KEGGiath:AT1G66400.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC020665 Genomic DNA. Translation: AAG52166.1.
CP002684 Genomic DNA. Translation: AEE34504.1.
AY063853 mRNA. Translation: AAL36209.1.
AY117325 mRNA. Translation: AAM51400.1.
AY088814 mRNA. Translation: AAM67124.1.
PIRiD96689.
RefSeqiNP_564874.1. NM_105311.3.
UniGeneiAt.27176.

3D structure databases

ProteinModelPortaliQ9C8Y1.
SMRiQ9C8Y1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G66400.1.

Proteomic databases

PaxDbiQ9C8Y1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G66400.1; AT1G66400.1; AT1G66400.
GeneIDi842958.
GrameneiAT1G66400.1; AT1G66400.1; AT1G66400.
KEGGiath:AT1G66400.

Organism-specific databases

TAIRiAT1G66400.

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
HOGENOMiHOG000233018.
InParanoidiQ9C8Y1.
KOiK13448.
OMAiNCLGSME.
OrthoDBiEOG09360QFU.
PhylomeDBiQ9C8Y1.

Miscellaneous databases

PROiQ9C8Y1.

Gene expression databases

GenevisibleiQ9C8Y1. AT.

Family and domain databases

CDDicd00051. EFh. 2 hits.
Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 2 hits.
[Graphical view]
SMARTiSM00054. EFh. 4 hits.
[Graphical view]
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiPS00018. EF_HAND_1. 4 hits.
PS50222. EF_HAND_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCML23_ARATH
AccessioniPrimary (citable) accession number: Q9C8Y1
Secondary accession number(s): Q8L8T8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 2001
Last modified: November 30, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Although assigned as a calmodulin family member by Ref. 5, it only contains EF-hand domains.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.