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Protein

C2 domain-containing protein At1g63220

Gene

At1g63220

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
C2 domain-containing protein At1g63220
Gene namesi
Ordered Locus Names:At1g63220
ORF Names:F9N12.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G63220.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 147147C2 domain-containing protein At1g63220PRO_0000220593Add
BLAST

Proteomic databases

PaxDbiQ9C8S6.
PRIDEiQ9C8S6.

Expressioni

Gene expression databases

ExpressionAtlasiQ9C8S6. baseline and differential.
GenevisibleiQ9C8S6. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G63220.1.

Structurei

Secondary structure

1
147
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 1513Combined sources
Beta strandi29 – 357Combined sources
Beta strandi37 – 393Combined sources
Beta strandi51 – 6313Combined sources
Beta strandi66 – 716Combined sources
Beta strandi74 – 763Combined sources
Turni78 – 803Combined sources
Beta strandi83 – 908Combined sources
Helixi91 – 966Combined sources
Beta strandi97 – 10812Combined sources
Beta strandi111 – 12414Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WFJNMR-A2-124[»]
ProteinModelPortaliQ9C8S6.
SMRiQ9C8S6. Positions 2-125.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9C8S6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 8787C2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 C2 domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1030. Eukaryota.
COG5038. LUCA.
HOGENOMiHOG000005983.
InParanoidiQ9C8S6.
OMAiLTCRTQD.
PhylomeDBiQ9C8S6.

Family and domain databases

Gene3Di2.60.40.150. 1 hit.
InterProiIPR000008. C2_dom.
[Graphical view]
PfamiPF00168. C2. 1 hit.
[Graphical view]
SMARTiSM00239. C2. 1 hit.
[Graphical view]
SUPFAMiSSF49562. SSF49562. 1 hit.
PROSITEiPS50004. C2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q9C8S6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MPHGTLEVVL VSAKGLEDAD FLNNMDPYVQ LTCRTQDQKS NVAEGMGTTP
60 70 80 90 100
EWNETFIFTV SEGTTELKAK IFDKDVGTED DAVGEATIPL EPVFVEGSIP
110 120 130 140
PTAYNVVKDE EYKGEIWVAL SFKPSENRSR GMDEESYGGW KNSEASY
Length:147
Mass (Da):16,266
Last modified:June 1, 2001 - v1
Checksum:i8E051C9CAE217CAB
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti126 – 1261E → G in AAM63058 (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC022355 Genomic DNA. Translation: AAG52148.1.
CP002684 Genomic DNA. Translation: AEE34071.1.
AY054623 mRNA. Translation: AAK96814.1.
AY081504 mRNA. Translation: AAM10066.1.
AY085843 mRNA. Translation: AAM63058.1.
PIRiH96657.
RefSeqiNP_176511.1. NM_105001.3. [Q9C8S6-1]
UniGeneiAt.24672.

Genome annotation databases

EnsemblPlantsiAT1G63220.1; AT1G63220.1; AT1G63220. [Q9C8S6-1]
GeneIDi842627.
KEGGiath:AT1G63220.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC022355 Genomic DNA. Translation: AAG52148.1.
CP002684 Genomic DNA. Translation: AEE34071.1.
AY054623 mRNA. Translation: AAK96814.1.
AY081504 mRNA. Translation: AAM10066.1.
AY085843 mRNA. Translation: AAM63058.1.
PIRiH96657.
RefSeqiNP_176511.1. NM_105001.3. [Q9C8S6-1]
UniGeneiAt.24672.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WFJNMR-A2-124[»]
ProteinModelPortaliQ9C8S6.
SMRiQ9C8S6. Positions 2-125.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G63220.1.

Proteomic databases

PaxDbiQ9C8S6.
PRIDEiQ9C8S6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G63220.1; AT1G63220.1; AT1G63220. [Q9C8S6-1]
GeneIDi842627.
KEGGiath:AT1G63220.

Organism-specific databases

TAIRiAT1G63220.

Phylogenomic databases

eggNOGiKOG1030. Eukaryota.
COG5038. LUCA.
HOGENOMiHOG000005983.
InParanoidiQ9C8S6.
OMAiLTCRTQD.
PhylomeDBiQ9C8S6.

Miscellaneous databases

EvolutionaryTraceiQ9C8S6.
PROiQ9C8S6.

Gene expression databases

ExpressionAtlasiQ9C8S6. baseline and differential.
GenevisibleiQ9C8S6. AT.

Family and domain databases

Gene3Di2.60.40.150. 1 hit.
InterProiIPR000008. C2_dom.
[Graphical view]
PfamiPF00168. C2. 1 hit.
[Graphical view]
SMARTiSM00239. C2. 1 hit.
[Graphical view]
SUPFAMiSSF49562. SSF49562. 1 hit.
PROSITEiPS50004. C2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "C2 domain-containing protein from putative elicitor-responsive gene."
    RIKEN structural genomics initiative (RSGI)
    Submitted (NOV-2004) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 2-125.

Entry informationi

Entry nameiY1322_ARATH
AccessioniPrimary (citable) accession number: Q9C8S6
Secondary accession number(s): Q8LDR6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: June 1, 2001
Last modified: June 8, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.