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Protein
Submitted name:

RNA-binding protein, putative; 35994-37391

Gene

F5D21.5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein, putative; 35994-37391Imported
Gene namesi
Name:F5D21.5Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ9C8K3.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G51510.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C8K3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini95 – 173RRM (RNA recognition motif)InterPro annotationAdd BLAST79

Phylogenomic databases

eggNOGiKOG0130. Eukaryota.
ENOG4111IHM. LUCA.

Family and domain databases

CDDicd12324. RRM_RBM8. 1 hit.
Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR008111. RNA-bd_8.
IPR000504. RRM_dom.
IPR033744. RRM_RBM8.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
PRINTSiPR01738. RNABINDINGM8.
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C8K3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANIESEAVD FEPEEDDLMD EEGTAIDGAD VSPRAGHPRL KSAIAGANGE
60 70 80 90 100
SAKKTKGRGF REEKDSDRQR RLSSRDFESL GSDGRPGPQR SVEGWIILVS
110 120 130 140 150
GVHEETQEED ITNAFGDFGE IKNLNLNLDR RSGYVKGYAL IEYEKKEEAQ
160 170 180 190
SAISAMNGAE LLTQNVSVDW AFSSGPSGGE SYRRKNSRFV S
Length:191
Mass (Da):20,965
Last modified:June 1, 2001 - v1
Checksum:i139AD1CDF7AC43A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC024261 Genomic DNA. Translation: AAG52616.1.
PIRiE96553.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC024261 Genomic DNA. Translation: AAG52616.1.
PIRiE96553.

3D structure databases

ProteinModelPortaliQ9C8K3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G51510.1.

Proteomic databases

PaxDbiQ9C8K3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0130. Eukaryota.
ENOG4111IHM. LUCA.

Family and domain databases

CDDicd12324. RRM_RBM8. 1 hit.
Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR008111. RNA-bd_8.
IPR000504. RRM_dom.
IPR033744. RRM_RBM8.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
PRINTSiPR01738. RNABINDINGM8.
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9C8K3_ARATH
AccessioniPrimary (citable) accession number: Q9C8K3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: November 30, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.