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Protein

Putative myrosinase 6

Gene

TGG6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein uncertaini

Functioni

Catalytic activityi

A thioglucoside + H2O = a sugar + a thiol.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei39 – 391SubstrateBy similarity
Binding sitei140 – 1401SubstrateBy similarity
Binding sitei184 – 1841SubstrateBy similarity
Binding sitei185 – 1851AscorbateBy similarity
Binding sitei254 – 2541AscorbateBy similarity
Binding sitei321 – 3211SubstrateBy similarity
Binding sitei440 – 4401SubstrateBy similarity

GO - Molecular functioni

GO - Biological processi

  • carbohydrate metabolic process Source: InterPro
  • response to salt stress Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BioCyciARA:AT1G51490-MONOMER.

Protein family/group databases

CAZyiGH1. Glycoside Hydrolase Family 1.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative myrosinase 6 (EC:3.2.1.147)
Alternative name(s):
Beta-glucosidase 36
Short name:
AtBGLU36
Sinigrinase 6
Thioglucosidase 6
Gene namesi
Name:TGG6
Synonyms:BGLU36
Ordered Locus Names:At1g51490
ORF Names:F5D21.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G51490.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 484484Putative myrosinase 6PRO_0000389598Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi28 – 281N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi204 ↔ 207By similarity
Glycosylationi260 – 2601N-linked (GlcNAc...)Sequence Analysis
Glycosylationi462 – 4621N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ9C8K1.
PRIDEiQ9C8K1.

Expressioni

Gene expression databases

GenevestigatoriQ9C8K1.

Structurei

3D structure databases

ProteinModelPortaliQ9C8K1.
SMRiQ9C8K1. Positions 27-484.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni447 – 4482Substrate bindingBy similarity

Sequence similaritiesi

Belongs to the glycosyl hydrolase 1 family.Curated

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088630.
InParanoidiQ9C8K1.
KOiK01237.
OMAiNGRIQFQ.
PhylomeDBiQ9C8K1.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C8K1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQSRMQGQRT LQLRQNSCIQ PKWISQKNFT FGAATSAYQV EGAAHRALNG
60 70 80 90 100
WDYFTHRYPE RVSDRSIGDL ACNSYDLYKD DVKLLKRMNV QAYRFSIAWS
110 120 130 140 150
RVLPKGRLIG GVDENGITYY NNLINELKAN GIEPFVTIFH WDVPQDFRRR
160 170 180 190 200
IWRLLKPTYS DFKNYAELLF QRFGDRVKFW ITLNQPYSLA VKGYGDGQYP
210 220 230 240 250
PGRCTDCEFG GDSGTEPYIV GHHELLAHME AVSLYRKRYQ KFQGGKIGTT
260 270 280 290 300
LIGRWFIPLN ETNDLDKAAA KREFDFSVLG STGVRTISKD NERLGDRLPK
310 320 330 340 350
FTPKQSALLK GSLDFLGLNY YVTRYATYRP PPMPTQHSVL TDSGVTIGFE
360 370 380 390 400
RNGVSIGVKA SINFDVKDLR HLVDFFLFVE LLLLSTRIPS DSKSHQKQEL
410 420 430 440 450
LMLIANALAD NGRIQFQCSH LSCLKCAIED GCNVAGYFAW SLMDNYEFGN
460 470 480
GYTLRFDMNW VNFTNPADRR EKASGKWFSR FIAK
Length:484
Mass (Da):55,527
Last modified:November 24, 2009 - v2
Checksum:i0ACA3B6F3225154D
GO

Sequence cautioni

The sequence AAG52622.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC024261 Genomic DNA. Translation: AAG52622.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE32673.1.
PIRiC96553.
RefSeqiNP_175560.2. NM_104027.2.
UniGeneiAt.52136.

Genome annotation databases

EnsemblPlantsiAT1G51490.1; AT1G51490.1; AT1G51490.
GeneIDi841574.
KEGGiath:AT1G51490.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC024261 Genomic DNA. Translation: AAG52622.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE32673.1.
PIRiC96553.
RefSeqiNP_175560.2. NM_104027.2.
UniGeneiAt.52136.

3D structure databases

ProteinModelPortaliQ9C8K1.
SMRiQ9C8K1. Positions 27-484.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiGH1. Glycoside Hydrolase Family 1.

Proteomic databases

PaxDbiQ9C8K1.
PRIDEiQ9C8K1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G51490.1; AT1G51490.1; AT1G51490.
GeneIDi841574.
KEGGiath:AT1G51490.

Organism-specific databases

TAIRiAT1G51490.

Phylogenomic databases

eggNOGiCOG2723.
HOGENOMiHOG000088630.
InParanoidiQ9C8K1.
KOiK01237.
OMAiNGRIQFQ.
PhylomeDBiQ9C8K1.

Enzyme and pathway databases

BioCyciARA:AT1G51490-MONOMER.

Gene expression databases

GenevestigatoriQ9C8K1.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiBGL36_ARATH
AccessioniPrimary (citable) accession number: Q9C8K1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 27, 2015
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.