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Protein

Putative 60S ribosomal protein L30-1

Gene

RPL30A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • mature ribosome assembly Source: CAFA

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
Putative 60S ribosomal protein L30-1
Gene namesi
Name:RPL30A
Ordered Locus Names:At1g36240
ORF Names:F15C21.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G36240.
TAIRilocus:2013205. AT1G36240.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002447471 – 112Putative 60S ribosomal protein L30-1Add BLAST112

Proteomic databases

PaxDbiQ9C8F7.
PRIDEiQ9C8F7.

PTM databases

iPTMnetiQ9C8F7.

Expressioni

Gene expression databases

GenevisibleiQ9C8F7. AT.

Interactioni

Protein-protein interaction databases

BioGridi25762. 5 interactors.
IntActiQ9C8F7. 3 interactors.
STRINGi3702.AT1G36240.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C8F7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG2988. Eukaryota.
COG1911. LUCA.
HOGENOMiHOG000055224.
InParanoidiQ9C8F7.
KOiK02908.
OMAiNTTEYAH.
OrthoDBiEOG09360TU0.
PhylomeDBiQ9C8F7.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiView protein in InterPro
IPR029064. L30e-like.
IPR000231. Ribosomal_L30e.
IPR022991. Ribosomal_L30e_CS.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
PANTHERiPTHR11449:SF5. PTHR11449:SF5. 1 hit.
PfamiView protein in Pfam
PF01248. Ribosomal_L7Ae. 1 hit.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiView protein in PROSITE
PS00709. RIBOSOMAL_L30E_1. 1 hit.
PS00993. RIBOSOMAL_L30E_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9C8F7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVAAKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS
60 70 80 90 100
NCPPLRRSEI EYYAMLAKVG VHHYNRNNVD LGTACGKYFR VSCLSIVDPG
110
DSDIIKSLPG DQ
Length:112
Mass (Da):12,317
Last modified:June 1, 2001 - v1
Checksum:i4A56371F0A3E9F79
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC025781 Genomic DNA. Translation: AAG51255.1.
CP002684 Genomic DNA. Translation: AEE31854.1.
PIRiH86483.
RefSeqiNP_174853.1. NM_103317.1.
UniGeneiAt.51975.

Genome annotation databases

EnsemblPlantsiAT1G36240.1; AT1G36240.1; AT1G36240.
GeneIDi840530.
GrameneiAT1G36240.1; AT1G36240.1; AT1G36240.
KEGGiath:AT1G36240.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL301_ARATH
AccessioniPrimary (citable) accession number: Q9C8F7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: June 1, 2001
Last modified: July 5, 2017
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families