Q9C810 (Y1342_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
PHD finger protein At1g33420

Gene names

Ordered Locus Names:	At1g33420
ORF Names:	F10C21.9

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	697 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Subcellular location	Nucleus By similarity.
Sequence similarities	Contains 1 PHD-type zinc finger.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Zinc-finger
Ligand	Metal-binding Zinc
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 697

697

PHD finger protein At1g33420

PRO_0000059335

Regions

Zinc finger

603 – 653

51

PHD-type

Secondary structure

1

.

.

.

.

.

.

.

.

.

.

697

Helix Strand Turn

Details...

Beta strand

601 – 604

4

Beta strand

618 – 620

3

Beta strand

622 – 624

3

Beta strand

626 – 629

4

Turn

630 – 634

5

Sequences

	Sequence		Length	Mass (Da)
	Q9C810 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: 1ADC87D95DA4B937	FASTA	697	78,094
	10 20 30 40 50 60 MAVMNGGRAT KRARRSNRIS ADLYDFSTFP TAEINGESTT LPPFRDGVRT FLATHARVTF 70 80 90 100 110 120 PPSTLFSSLM TWQIMLRPGD STDGSDLSSK LVSLDVVEED VTRSSRSVYC EHCCVVGWSS 130 140 150 160 170 180 HPVCRKRYRF IIRSGGDTKA CTRCGNTQNL SEGSNCKWCS MALDIENWVY SQLEDNTHLL 190 200 210 220 230 240 HGVIHSNGYA HLLCLNGREG GSGFLTGRAI MDFWDRLCSS LAVRKASVMD VSRKYGMDYR 250 260 270 280 290 300 LLHGITRGCS WYSEWGYEFK SGSYALTKEA YQSAVDTLSA IPLSEFLFQG RKPRTQLHSI 310 320 330 340 350 360 ISFYQSLSCS ELVTVKDLFS FLLQMIRENS SKPASKSSVL CAWSKSDVER VQQTMVKILK 370 380 390 400 410 420 ASGRPQANWV TRWALKRSIC KSASPQLIDY CLKHFGGVLV DDGSRVVSSR CNPGSNDFEY 430 440 450 460 470 480 RLESVNNVHR LSNQDVNNAS VEHVKQDLRY LYETLLHPQT MAEFRSRATR EKMIDAATKI 490 500 510 520 530 540 LDCKHFIKDY LSSTVNPVAI NLWCCVELSD ELKESPAPPP ERLVLPLNAT VSDLKIEAAK 550 560 570 580 590 600 AFQEVYAMFK RFEVEELLGY GSIDDSITLK FLVGTNGVIR IKGRCSKHGL LRYRMERGVD 610 620 630 640 650 660 NWKVDCKCGT KDDDGERMLA CDGCGVWHHT RCIGINNADA LPSKFLCFRC IELYSKKPKQ 670 680 690 SKKERGSSQV PKAGFVCRGE SAAMGSGSNL SVTLRVG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Solution structure of PHD domain in PHD finger family protein." RIKEN structural genomics initiative (RSGI) Submitted (NOV-2004) to the PDB data bank Cited for: STRUCTURE BY NMR OF 595-653.
+	Additional computationally mapped references.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AC051630 Genomic DNA. Translation: AAG51204.1.
CP002684 Genomic DNA. Translation: AEE31592.1.
AY035054 mRNA. Translation: AAK59559.1.
AY051061 mRNA. Translation: AAK93738.1.

IPI

IPI00526946.

PIR

H86457.

RefSeq

NP_564424.1. NM_103067.1.

UniGene

At.17514.
At.75140.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1WEE	NMR	-	A	595-653	[»]

ProteinModelPortal

Q9C810.

SMR

Q9C810. Positions 595-653.

ModBase

Search...

Protein-protein interaction databases

STRING

Q9C810.

Proteomic databases

PRIDE

Q9C810.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblPlants

AT1G33420.1; AT1G33420.1; AT1G33420.

GeneID

840235.

GenomeReviews

Gene locus AT1G33420 in contig CT485782_GR.

KEGG

ath:AT1G33420.

NMPDR

fig|3702.1.peg.3696.

Organism-specific databases

TAIR

At1g33420.

Phylogenomic databases

eggNOG

KOG1844.

GeneTree

EPGT00050000013032.

HOGENOM

HBG746396.

InParanoid

Q9C810.

OMA

HARVTFP.

PhylomeDB

Q9C810.

ProtClustDB

CLSN2688239.

Gene expression databases

ArrayExpress

Q9C810.

Genevestigator

Q9C810.

GermOnline

AT1G33420. Arabidopsis thaliana.

Family and domain databases

InterPro

IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]

Gene3D

G3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit.

Pfam

PF00628. PHD. 1 hit.
[Graphical view]

SMART

SM00249. PHD. 1 hit.
[Graphical view]

SUPFAM

SSF57903. FYVE_PHD_ZnF. 1 hit.

PROSITE

PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. False negative.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Y1342_ARATH

Accession

Primary (citable) accession number: Q9C810

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 30, 2005
Last sequence update:	June 1, 2001
Last modified:	December 14, 2011
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program