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Protein

PHD finger protein At1g33420

Gene

At1g33420

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri603 – 65351PHD-typeAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
PHD finger protein At1g33420
Gene namesi
Ordered Locus Names:At1g33420
ORF Names:F10C21.9
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G33420.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 697697PHD finger protein At1g33420PRO_0000059335Add
BLAST

Proteomic databases

PaxDbiQ9C810.
PRIDEiQ9C810.

PTM databases

iPTMnetiQ9C810.

Expressioni

Gene expression databases

GenevisibleiQ9C810. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G33420.1.

Structurei

Secondary structure

1
697
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi601 – 6044Combined sources
Beta strandi618 – 6203Combined sources
Beta strandi622 – 6243Combined sources
Beta strandi626 – 6294Combined sources
Turni630 – 6345Combined sources
Helixi648 – 6536Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WEENMR-A595-653[»]
ProteinModelPortaliQ9C810.
SMRiQ9C810. Positions 595-653.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9C810.

Family & Domainsi

Sequence similaritiesi

Contains 1 PHD-type zinc finger.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri603 – 65351PHD-typeAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IMX2. Eukaryota.
ENOG410YQGC. LUCA.
HOGENOMiHOG000238527.
InParanoidiQ9C810.
OMAiLLCHVEL.
PhylomeDBiQ9C810.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00628. PHD. 1 hit.
[Graphical view]
SMARTiSM00249. PHD. 1 hit.
[Graphical view]
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiPS01359. ZF_PHD_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C810-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVMNGGRAT KRARRSNRIS ADLYDFSTFP TAEINGESTT LPPFRDGVRT
60 70 80 90 100
FLATHARVTF PPSTLFSSLM TWQIMLRPGD STDGSDLSSK LVSLDVVEED
110 120 130 140 150
VTRSSRSVYC EHCCVVGWSS HPVCRKRYRF IIRSGGDTKA CTRCGNTQNL
160 170 180 190 200
SEGSNCKWCS MALDIENWVY SQLEDNTHLL HGVIHSNGYA HLLCLNGREG
210 220 230 240 250
GSGFLTGRAI MDFWDRLCSS LAVRKASVMD VSRKYGMDYR LLHGITRGCS
260 270 280 290 300
WYSEWGYEFK SGSYALTKEA YQSAVDTLSA IPLSEFLFQG RKPRTQLHSI
310 320 330 340 350
ISFYQSLSCS ELVTVKDLFS FLLQMIRENS SKPASKSSVL CAWSKSDVER
360 370 380 390 400
VQQTMVKILK ASGRPQANWV TRWALKRSIC KSASPQLIDY CLKHFGGVLV
410 420 430 440 450
DDGSRVVSSR CNPGSNDFEY RLESVNNVHR LSNQDVNNAS VEHVKQDLRY
460 470 480 490 500
LYETLLHPQT MAEFRSRATR EKMIDAATKI LDCKHFIKDY LSSTVNPVAI
510 520 530 540 550
NLWCCVELSD ELKESPAPPP ERLVLPLNAT VSDLKIEAAK AFQEVYAMFK
560 570 580 590 600
RFEVEELLGY GSIDDSITLK FLVGTNGVIR IKGRCSKHGL LRYRMERGVD
610 620 630 640 650
NWKVDCKCGT KDDDGERMLA CDGCGVWHHT RCIGINNADA LPSKFLCFRC
660 670 680 690
IELYSKKPKQ SKKERGSSQV PKAGFVCRGE SAAMGSGSNL SVTLRVG
Length:697
Mass (Da):78,094
Last modified:June 1, 2001 - v1
Checksum:i1ADC87D95DA4B937
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC051630 Genomic DNA. Translation: AAG51204.1.
CP002684 Genomic DNA. Translation: AEE31592.1.
AY035054 mRNA. Translation: AAK59559.1.
AY051061 mRNA. Translation: AAK93738.1.
PIRiH86457.
RefSeqiNP_564424.1. NM_103067.1.
UniGeneiAt.17514.
At.75640.

Genome annotation databases

EnsemblPlantsiAT1G33420.1; AT1G33420.1; AT1G33420.
GeneIDi840235.
GrameneiAT1G33420.1; AT1G33420.1; AT1G33420.
KEGGiath:AT1G33420.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC051630 Genomic DNA. Translation: AAG51204.1.
CP002684 Genomic DNA. Translation: AEE31592.1.
AY035054 mRNA. Translation: AAK59559.1.
AY051061 mRNA. Translation: AAK93738.1.
PIRiH86457.
RefSeqiNP_564424.1. NM_103067.1.
UniGeneiAt.17514.
At.75640.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WEENMR-A595-653[»]
ProteinModelPortaliQ9C810.
SMRiQ9C810. Positions 595-653.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G33420.1.

PTM databases

iPTMnetiQ9C810.

Proteomic databases

PaxDbiQ9C810.
PRIDEiQ9C810.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G33420.1; AT1G33420.1; AT1G33420.
GeneIDi840235.
GrameneiAT1G33420.1; AT1G33420.1; AT1G33420.
KEGGiath:AT1G33420.

Organism-specific databases

TAIRiAT1G33420.

Phylogenomic databases

eggNOGiENOG410IMX2. Eukaryota.
ENOG410YQGC. LUCA.
HOGENOMiHOG000238527.
InParanoidiQ9C810.
OMAiLLCHVEL.
PhylomeDBiQ9C810.

Miscellaneous databases

EvolutionaryTraceiQ9C810.
PROiQ9C810.

Gene expression databases

GenevisibleiQ9C810. AT.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00628. PHD. 1 hit.
[Graphical view]
SMARTiSM00249. PHD. 1 hit.
[Graphical view]
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiPS01359. ZF_PHD_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Solution structure of PHD domain in PHD finger family protein."
    RIKEN structural genomics initiative (RSGI)
    Submitted (NOV-2004) to the PDB data bank
    Cited for: STRUCTURE BY NMR OF 595-653.

Entry informationi

Entry nameiY1342_ARATH
AccessioniPrimary (citable) accession number: Q9C810
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: June 1, 2001
Last modified: February 17, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.