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Protein

PHD finger protein At1g33420

Gene

At1g33420

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri603 – 653PHD-typeAdd BLAST51

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
PHD finger protein At1g33420
Gene namesi
Ordered Locus Names:At1g33420
ORF Names:F10C21.9
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G33420
TAIRilocus:2006882 AT1G33420

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000593351 – 697PHD finger protein At1g33420Add BLAST697

Proteomic databases

PaxDbiQ9C810
PRIDEiQ9C810

Expressioni

Gene expression databases

ExpressionAtlasiQ9C810 baseline and differential
GenevisibleiQ9C810 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G33420.1

Structurei

Secondary structure

1697
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi601 – 604Combined sources4
Beta strandi618 – 620Combined sources3
Beta strandi622 – 624Combined sources3
Beta strandi626 – 629Combined sources4
Turni630 – 634Combined sources5
Helixi648 – 653Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1WEENMR-A595-653[»]
ProteinModelPortaliQ9C810
SMRiQ9C810
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9C810

Family & Domainsi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri603 – 653PHD-typeAdd BLAST51

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IMX2 Eukaryota
ENOG410YQGC LUCA
HOGENOMiHOG000238527
InParanoidiQ9C810
OMAiYAMFKRF
OrthoDBiEOG093603IF
PhylomeDBiQ9C810

Family and domain databases

Gene3Di3.30.40.101 hit
InterProiView protein in InterPro
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR019787 Znf_PHD-finger
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF00628 PHD, 1 hit
SMARTiView protein in SMART
SM00249 PHD, 1 hit
SUPFAMiSSF57903 SSF57903, 1 hit
PROSITEiView protein in PROSITE
PS01359 ZF_PHD_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q9C810-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVMNGGRAT KRARRSNRIS ADLYDFSTFP TAEINGESTT LPPFRDGVRT
60 70 80 90 100
FLATHARVTF PPSTLFSSLM TWQIMLRPGD STDGSDLSSK LVSLDVVEED
110 120 130 140 150
VTRSSRSVYC EHCCVVGWSS HPVCRKRYRF IIRSGGDTKA CTRCGNTQNL
160 170 180 190 200
SEGSNCKWCS MALDIENWVY SQLEDNTHLL HGVIHSNGYA HLLCLNGREG
210 220 230 240 250
GSGFLTGRAI MDFWDRLCSS LAVRKASVMD VSRKYGMDYR LLHGITRGCS
260 270 280 290 300
WYSEWGYEFK SGSYALTKEA YQSAVDTLSA IPLSEFLFQG RKPRTQLHSI
310 320 330 340 350
ISFYQSLSCS ELVTVKDLFS FLLQMIRENS SKPASKSSVL CAWSKSDVER
360 370 380 390 400
VQQTMVKILK ASGRPQANWV TRWALKRSIC KSASPQLIDY CLKHFGGVLV
410 420 430 440 450
DDGSRVVSSR CNPGSNDFEY RLESVNNVHR LSNQDVNNAS VEHVKQDLRY
460 470 480 490 500
LYETLLHPQT MAEFRSRATR EKMIDAATKI LDCKHFIKDY LSSTVNPVAI
510 520 530 540 550
NLWCCVELSD ELKESPAPPP ERLVLPLNAT VSDLKIEAAK AFQEVYAMFK
560 570 580 590 600
RFEVEELLGY GSIDDSITLK FLVGTNGVIR IKGRCSKHGL LRYRMERGVD
610 620 630 640 650
NWKVDCKCGT KDDDGERMLA CDGCGVWHHT RCIGINNADA LPSKFLCFRC
660 670 680 690
IELYSKKPKQ SKKERGSSQV PKAGFVCRGE SAAMGSGSNL SVTLRVG
Length:697
Mass (Da):78,094
Last modified:June 1, 2001 - v1
Checksum:i1ADC87D95DA4B937
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC051630 Genomic DNA Translation: AAG51204.1
CP002684 Genomic DNA Translation: AEE31592.1
AY035054 mRNA Translation: AAK59559.1
AY051061 mRNA Translation: AAK93738.1
PIRiH86457
RefSeqiNP_564424.1, NM_103067.1
UniGeneiAt.17514
At.75640

Genome annotation databases

EnsemblPlantsiAT1G33420.1; AT1G33420.1; AT1G33420
GeneIDi840235
GrameneiAT1G33420.1; AT1G33420.1; AT1G33420
KEGGiath:AT1G33420

Similar proteinsi

Entry informationi

Entry nameiY1342_ARATH
AccessioniPrimary (citable) accession number: Q9C810
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: June 1, 2001
Last modified: April 25, 2018
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome