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Protein

ABC transporter B family member 13

Gene

ABCB13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi406 – 4138ATP 1PROSITE-ProRule annotation
Nucleotide bindingi1039 – 10468ATP 2PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT1G27940-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter B family member 13
Short name:
ABC transporter ABCB.13
Short name:
AtABCB13
Alternative name(s):
P-glycoprotein 13
Putative multidrug resistance protein 15
Gene namesi
Name:ABCB13
Synonyms:MDR15, PGP13
Ordered Locus Names:At1g27940
ORF Names:F13K9.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G27940.

Subcellular locationi

  • Membrane PROSITE-ProRule annotation; Multi-pass membrane protein PROSITE-ProRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei48 – 6821HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei94 – 11421HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei171 – 19121HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei195 – 21521HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei276 – 29621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei314 – 33421HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei686 – 70621HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei725 – 74521HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei805 – 82218HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei828 – 84821HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei913 – 93321HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei947 – 96721HelicalPROSITE-ProRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12451245ABC transporter B family member 13PRO_0000227926Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi77 – 771N-linked (GlcNAc...)Sequence analysis
Glycosylationi351 – 3511N-linked (GlcNAc...)Sequence analysis
Glycosylationi391 – 3911N-linked (GlcNAc...)Sequence analysis
Glycosylationi778 – 7781N-linked (GlcNAc...)Sequence analysis
Glycosylationi1008 – 10081N-linked (GlcNAc...)Sequence analysis
Glycosylationi1106 – 11061N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9C7F8.
PRIDEiQ9C7F8.

Expressioni

Gene expression databases

GenevisibleiQ9C7F8. AT.

Interactioni

Protein-protein interaction databases

BioGridi24922. 2 interactions.
MINTiMINT-8059137.
STRINGi3702.AT1G27940.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C7F8.
SMRiQ9C7F8. Positions 35-618, 682-1243.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini47 – 336290ABC transmembrane type-1 1PROSITE-ProRule annotationAdd
BLAST
Domaini372 – 607236ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini681 – 969289ABC transmembrane type-1 2PROSITE-ProRule annotationAdd
BLAST
Domaini1004 – 1240237ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi616 – 66550Ser-richAdd
BLAST

Sequence similaritiesi

Contains 2 ABC transmembrane type-1 domains.PROSITE-ProRule annotation
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0055. Eukaryota.
COG1132. LUCA.
InParanoidiQ9C7F8.
KOiK05658.
OMAiFLAFCSY.
OrthoDBiEOG093601EV.
PhylomeDBiQ9C7F8.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiPS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C7F8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG
60 70 80 90 100
GLGACIHGAT LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG
110 120 130 140 150
LVNFVSAWIG VSCWMQTGER QTARLRINYL KSILAKDITF FDTEARDSNL
160 170 180 190 200
IFHISSDAIL VQDAIGDKTD HVLRYLSQFI AGFVIGFLSV WQLTLLTLGV
210 220 230 240 250
VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV RTVYAFVGEE
260 270 280 290 300
KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV
310 320 330 340 350
RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN
360 370 380 390 400
NNSESSQRLD EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK
410 420 430 440 450
TFAFVGPSGS GKSTIISMVQ RFYEPNSGEI LLDGNDIKSL KLKWFREQLG
460 470 480 490 500
LVSQEPALFA TTIASNILLG KENANMDQII EAAKAANADS FIKSLPNGYN
510 520 530 540 550
TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL DAESEKIVQQ
560 570 580 590 600
ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD
610 620 630 640 650
YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE
660 670 680 690 700
KTKNDDSKKD FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM
710 720 730 740 750
GIAYVLTAFY SPFPNVIKRD VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG
760 770 780 790 800
ERLTSRVRLS LFSAILSNEI GWFDLDENNT GSLTSILAAD ATLVRSALAD
810 820 830 840 850
RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA SLTEQLFLKG
860 870 880 890 900
FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA
910 920 930 940 950
FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL
960 970 980 990 1000
IVTAFSVSET LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV
1010 1020 1030 1040 1050
KGDIEFRNVS FVYPTRPEID IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG
1060 1070 1080 1090 1100
LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK KLALVQQEPA LFSTTIYENI
1110 1120 1130 1140 1150
KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG VQLSGGQKQR
1160 1170 1180 1190 1200
VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR
1210 1220 1230 1240
LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL
Length:1,245
Mass (Da):135,776
Last modified:June 1, 2001 - v1
Checksum:iFDCE513FC3F14A1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069471 Genomic DNA. Translation: AAG51482.1.
CP002684 Genomic DNA. Translation: AEE30893.1.
PIRiG86404.
RefSeqiNP_174115.1. NM_102559.1.
UniGeneiAt.51796.

Genome annotation databases

EnsemblPlantsiAT1G27940.1; AT1G27940.1; AT1G27940.
GeneIDi839687.
GrameneiAT1G27940.1; AT1G27940.1; AT1G27940.
KEGGiath:AT1G27940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069471 Genomic DNA. Translation: AAG51482.1.
CP002684 Genomic DNA. Translation: AEE30893.1.
PIRiG86404.
RefSeqiNP_174115.1. NM_102559.1.
UniGeneiAt.51796.

3D structure databases

ProteinModelPortaliQ9C7F8.
SMRiQ9C7F8. Positions 35-618, 682-1243.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24922. 2 interactions.
MINTiMINT-8059137.
STRINGi3702.AT1G27940.1.

Proteomic databases

PaxDbiQ9C7F8.
PRIDEiQ9C7F8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G27940.1; AT1G27940.1; AT1G27940.
GeneIDi839687.
GrameneiAT1G27940.1; AT1G27940.1; AT1G27940.
KEGGiath:AT1G27940.

Organism-specific databases

TAIRiAT1G27940.

Phylogenomic databases

eggNOGiKOG0055. Eukaryota.
COG1132. LUCA.
InParanoidiQ9C7F8.
KOiK05658.
OMAiFLAFCSY.
OrthoDBiEOG093601EV.
PhylomeDBiQ9C7F8.

Enzyme and pathway databases

BioCyciARA:AT1G27940-MONOMER.

Miscellaneous databases

PROiQ9C7F8.

Gene expression databases

GenevisibleiQ9C7F8. AT.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 2 hits.
PF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF90123. SSF90123. 2 hits.
PROSITEiPS50929. ABC_TM1F. 2 hits.
PS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAB13B_ARATH
AccessioniPrimary (citable) accession number: Q9C7F8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: June 1, 2001
Last modified: September 7, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.