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Protein

Pentatricopeptide repeat-containing protein At1g31920

Gene

PCMP-H11

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g31920
Gene namesi
Name:PCMP-H11
Ordered Locus Names:At1g31920
ORF Names:F5M6.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G31920.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 606606Pentatricopeptide repeat-containing protein At1g31920PRO_0000342809Add
BLAST

Proteomic databases

PaxDbiQ9C6T2.
PRIDEiQ9C6T2.

Expressioni

Gene expression databases

GenevisibleiQ9C6T2. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G31920.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C6T2.
SMRiQ9C6T2. Positions 11-468.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati96 – 13035PPR 1Add
BLAST
Repeati131 – 16535PPR 2Add
BLAST
Repeati166 – 20035PPR 3Add
BLAST
Repeati201 – 22727PPR 4Add
BLAST
Repeati233 – 26331PPR 5Add
BLAST
Repeati268 – 29831PPR 6Add
BLAST
Repeati299 – 33335PPR 7Add
BLAST
Repeati334 – 36835PPR 8Add
BLAST
Repeati370 – 40435PPR 9Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni405 – 48076Type E motifAdd
BLAST
Regioni481 – 51131Type E(+) motifAdd
BLAST
Regioni512 – 60695Type DYW motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 9 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9C6T2.
OMAiSGWENSM.
PhylomeDBiQ9C6T2.

Family and domain databases

InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiPS51375. PPR. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C6T2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKAPILQSL LASRDDLTHN PEVNNFGGKE QECLYLLKRC HNIDEFKQVH
60 70 80 90 100
ARFIKLSLFY SSSFSASSVL AKCAHSGWEN SMNYAASIFR GIDDPCTFDF
110 120 130 140 150
NTMIRGYVNV MSFEEALCFY NEMMQRGNEP DNFTYPCLLK ACTRLKSIRE
160 170 180 190 200
GKQIHGQVFK LGLEADVFVQ NSLINMYGRC GEMELSSAVF EKLESKTAAS
210 220 230 240 250
WSSMVSARAG MGMWSECLLL FRGMCSETNL KAEESGMVSA LLACANTGAL
260 270 280 290 300
NLGMSIHGFL LRNISELNII VQTSLVDMYV KCGCLDKALH IFQKMEKRNN
310 320 330 340 350
LTYSAMISGL ALHGEGESAL RMFSKMIKEG LEPDHVVYVS VLNACSHSGL
360 370 380 390 400
VKEGRRVFAE MLKEGKVEPT AEHYGCLVDL LGRAGLLEEA LETIQSIPIE
410 420 430 440 450
KNDVIWRTFL SQCRVRQNIE LGQIAAQELL KLSSHNPGDY LLISNLYSQG
460 470 480 490 500
QMWDDVARTR TEIAIKGLKQ TPGFSIVELK GKTHRFVSQD RSHPKCKEIY
510 520 530 540 550
KMLHQMEWQL KFEGYSPDLT QILLNVDEEE KKERLKGHSQ KVAIAFGLLY
560 570 580 590 600
TPPGSIIKIA RNLRMCSDCH TYTKKISMIY EREIVVRDRN RFHLFKGGTC

SCKDYW
Length:606
Mass (Da):68,596
Last modified:June 1, 2001 - v1
Checksum:i3461654764DB64C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079041 Genomic DNA. Translation: AAG50713.1.
CP002684 Genomic DNA. Translation: AEE31416.1.
AK226634 mRNA. Translation: BAE98745.1.
PIRiD86443.
RefSeqiNP_174474.1. NM_102928.4.
UniGeneiAt.17278.

Genome annotation databases

EnsemblPlantsiAT1G31920.1; AT1G31920.1; AT1G31920.
GeneIDi840082.
GrameneiAT1G31920.1; AT1G31920.1; AT1G31920.
KEGGiath:AT1G31920.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079041 Genomic DNA. Translation: AAG50713.1.
CP002684 Genomic DNA. Translation: AEE31416.1.
AK226634 mRNA. Translation: BAE98745.1.
PIRiD86443.
RefSeqiNP_174474.1. NM_102928.4.
UniGeneiAt.17278.

3D structure databases

ProteinModelPortaliQ9C6T2.
SMRiQ9C6T2. Positions 11-468.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G31920.1.

Proteomic databases

PaxDbiQ9C6T2.
PRIDEiQ9C6T2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G31920.1; AT1G31920.1; AT1G31920.
GeneIDi840082.
GrameneiAT1G31920.1; AT1G31920.1; AT1G31920.
KEGGiath:AT1G31920.

Organism-specific databases

TAIRiAT1G31920.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9C6T2.
OMAiSGWENSM.
PhylomeDBiQ9C6T2.

Miscellaneous databases

PROiQ9C6T2.

Gene expression databases

GenevisibleiQ9C6T2. AT.

Family and domain databases

InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiPS51375. PPR. 8 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-527.
    Strain: cv. Columbia.
  4. "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants."
    Aubourg S., Boudet N., Kreis M., Lecharny A.
    Plant Mol. Biol. 42:603-613(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  5. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPPR68_ARATH
AccessioniPrimary (citable) accession number: Q9C6T2
Secondary accession number(s): Q0WVV3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 2001
Last modified: June 8, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.