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Protein

Pentatricopeptide repeat-containing protein At1g31920

Gene

PCMP-H11

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g31920
Gene namesi
Name:PCMP-H11
Ordered Locus Names:At1g31920
ORF Names:F5M6.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G31920
TAIRilocus:2034456 AT1G31920

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003428091 – 606Pentatricopeptide repeat-containing protein At1g31920Add BLAST606

Proteomic databases

PaxDbiQ9C6T2
PRIDEiQ9C6T2

Expressioni

Gene expression databases

ExpressionAtlasiQ9C6T2 baseline and differential
GenevisibleiQ9C6T2 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G31920.1

Structurei

3D structure databases

ProteinModelPortaliQ9C6T2
SMRiQ9C6T2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati96 – 130PPR 1Add BLAST35
Repeati131 – 165PPR 2Add BLAST35
Repeati166 – 200PPR 3Add BLAST35
Repeati201 – 227PPR 4Add BLAST27
Repeati233 – 263PPR 5Add BLAST31
Repeati268 – 298PPR 6Add BLAST31
Repeati299 – 333PPR 7Add BLAST35
Repeati334 – 368PPR 8Add BLAST35
Repeati370 – 404PPR 9Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni405 – 480Type E motifAdd BLAST76
Regioni481 – 511Type E(+) motifAdd BLAST31
Regioni512 – 606Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9C6T2
OMAiQEGRQLQ
OrthoDBiEOG093607OT
PhylomeDBiQ9C6T2

Family and domain databases

Gene3Di1.25.40.10, 2 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 4 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 8 hits

Sequencei

Sequence statusi: Complete.

Q9C6T2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKAPILQSL LASRDDLTHN PEVNNFGGKE QECLYLLKRC HNIDEFKQVH
60 70 80 90 100
ARFIKLSLFY SSSFSASSVL AKCAHSGWEN SMNYAASIFR GIDDPCTFDF
110 120 130 140 150
NTMIRGYVNV MSFEEALCFY NEMMQRGNEP DNFTYPCLLK ACTRLKSIRE
160 170 180 190 200
GKQIHGQVFK LGLEADVFVQ NSLINMYGRC GEMELSSAVF EKLESKTAAS
210 220 230 240 250
WSSMVSARAG MGMWSECLLL FRGMCSETNL KAEESGMVSA LLACANTGAL
260 270 280 290 300
NLGMSIHGFL LRNISELNII VQTSLVDMYV KCGCLDKALH IFQKMEKRNN
310 320 330 340 350
LTYSAMISGL ALHGEGESAL RMFSKMIKEG LEPDHVVYVS VLNACSHSGL
360 370 380 390 400
VKEGRRVFAE MLKEGKVEPT AEHYGCLVDL LGRAGLLEEA LETIQSIPIE
410 420 430 440 450
KNDVIWRTFL SQCRVRQNIE LGQIAAQELL KLSSHNPGDY LLISNLYSQG
460 470 480 490 500
QMWDDVARTR TEIAIKGLKQ TPGFSIVELK GKTHRFVSQD RSHPKCKEIY
510 520 530 540 550
KMLHQMEWQL KFEGYSPDLT QILLNVDEEE KKERLKGHSQ KVAIAFGLLY
560 570 580 590 600
TPPGSIIKIA RNLRMCSDCH TYTKKISMIY EREIVVRDRN RFHLFKGGTC

SCKDYW
Length:606
Mass (Da):68,596
Last modified:June 1, 2001 - v1
Checksum:i3461654764DB64C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC079041 Genomic DNA Translation: AAG50713.1
CP002684 Genomic DNA Translation: AEE31416.1
AK226634 mRNA Translation: BAE98745.1
PIRiD86443
RefSeqiNP_174474.1, NM_102928.5
UniGeneiAt.17278

Genome annotation databases

EnsemblPlantsiAT1G31920.1; AT1G31920.1; AT1G31920
GeneIDi840082
GrameneiAT1G31920.1; AT1G31920.1; AT1G31920
KEGGiath:AT1G31920

Similar proteinsi

Entry informationi

Entry nameiPPR68_ARATH
AccessioniPrimary (citable) accession number: Q9C6T2
Secondary accession number(s): Q0WVV3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 2001
Last modified: April 25, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health