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Protein

F-box/LRR-repeat protein 4

Gene

FBL4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
F-box/LRR-repeat protein 4
Short name:
AtFBL4
Gene namesi
Name:FBL4
Ordered Locus Names:At4g15475
ORF Names:dl3775w, FCAALL.58
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G15475.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 610610F-box/LRR-repeat protein 4PRO_0000365172Add
BLAST

Proteomic databases

PaxDbiQ9C5D2.
PRIDEiQ9C5D2.

Expressioni

Gene expression databases

GenevisibleiQ9C5D2. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G15475.1.

Structurei

3D structure databases

ProteinModelPortaliQ9C5D2.
SMRiQ9C5D2. Positions 13-536.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 5248F-boxAdd
BLAST
Repeati53 – 7927LRR 1Add
BLAST
Repeati124 – 14926LRR 2Add
BLAST
Repeati150 – 17526LRR 3Add
BLAST
Repeati178 – 20023LRR 4Add
BLAST
Repeati201 – 22727LRR 5Add
BLAST
Repeati228 – 25326LRR 6Add
BLAST
Repeati256 – 27722LRR 7Add
BLAST
Repeati278 – 30326LRR 8Add
BLAST
Repeati304 – 32926LRR 9Add
BLAST
Repeati330 – 35526LRR 10Add
BLAST
Repeati356 – 38126LRR 11Add
BLAST
Repeati382 – 40726LRR 12Add
BLAST
Repeati408 – 43326LRR 13Add
BLAST
Repeati434 – 45926LRR 14Add
BLAST
Repeati460 – 48425LRR 15Add
BLAST
Repeati485 – 51026LRR 16Add
BLAST
Repeati511 – 53626LRR 17Add
BLAST
Repeati537 – 56226LRR 18Add
BLAST
Repeati563 – 58826LRR 19Add
BLAST

Sequence similaritiesi

Contains 1 F-box domain.Curated
Contains 19 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG1947. Eukaryota.
ENOG410XQ54. LUCA.
HOGENOMiHOG000243338.
InParanoidiQ9C5D2.
KOiK10268.
OMAiCPEVTDV.
PhylomeDBiQ9C5D2.

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR001810. F-box_dom.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR006553. Leu-rich_rpt_Cys-con_subtyp.
[Graphical view]
PfamiPF12937. F-box-like. 1 hit.
PF13516. LRR_6. 6 hits.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
SM00367. LRR_CC. 17 hits.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9C5D2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL
60 70 80 90 100
RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
110 120 130 140 150
SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC
160 170 180 190 200
PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
210 220 230 240 250
CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY
260 270 280 290 300
LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
310 320 330 340 350
LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER
360 370 380 390 400
VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
410 420 430 440 450
EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK
460 470 480 490 500
SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
510 520 530 540 550
PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ
560 570 580 590 600
KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
610
SVISYLCMDL
Length:610
Mass (Da):66,422
Last modified:June 1, 2001 - v1
Checksum:i2A165F930CBB69CA
GO

Sequence cautioni

The sequence CAB10325.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At4g15470 has been split into 2 genes: At4g15470 and At4g15475.Curated
The sequence CAB78589.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At4g15470 has been split into 2 genes: At4g15470 and At4g15475.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti71 – 711Y → H in AAM60829 (Ref. 5) Curated
Sequence conflicti116 – 1161H → Q in AAM60829 (Ref. 5) Curated
Sequence conflicti137 – 1371N → D in AAM60829 (Ref. 5) Curated
Sequence conflicti213 – 2131V → A in AAM60829 (Ref. 5) Curated
Sequence conflicti269 – 2691H → N in AAM60829 (Ref. 5) Curated
Sequence conflicti463 – 4631V → I in AAM60829 (Ref. 5) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97339 Genomic DNA. Translation: CAB10325.1. Sequence problems.
AL161541 Genomic DNA. Translation: CAB78589.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83608.1.
AF360328 mRNA. Translation: AAK26038.1.
AF361808 mRNA. Translation: AAK32821.1.
AY056338 mRNA. Translation: AAL07187.1.
AY084229 mRNA. Translation: AAM60829.1.
RefSeqiNP_567467.1. NM_117637.4.
UniGeneiAt.26216.
At.66613.

Genome annotation databases

EnsemblPlantsiAT4G15475.1; AT4G15475.1; AT4G15475.
GeneIDi827219.
GrameneiAT4G15475.1; AT4G15475.1; AT4G15475.
KEGGiath:AT4G15475.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97339 Genomic DNA. Translation: CAB10325.1. Sequence problems.
AL161541 Genomic DNA. Translation: CAB78589.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83608.1.
AF360328 mRNA. Translation: AAK26038.1.
AF361808 mRNA. Translation: AAK32821.1.
AY056338 mRNA. Translation: AAL07187.1.
AY084229 mRNA. Translation: AAM60829.1.
RefSeqiNP_567467.1. NM_117637.4.
UniGeneiAt.26216.
At.66613.

3D structure databases

ProteinModelPortaliQ9C5D2.
SMRiQ9C5D2. Positions 13-536.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G15475.1.

Proteomic databases

PaxDbiQ9C5D2.
PRIDEiQ9C5D2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G15475.1; AT4G15475.1; AT4G15475.
GeneIDi827219.
GrameneiAT4G15475.1; AT4G15475.1; AT4G15475.
KEGGiath:AT4G15475.

Organism-specific databases

TAIRiAT4G15475.

Phylogenomic databases

eggNOGiKOG1947. Eukaryota.
ENOG410XQ54. LUCA.
HOGENOMiHOG000243338.
InParanoidiQ9C5D2.
KOiK10268.
OMAiCPEVTDV.
PhylomeDBiQ9C5D2.

Miscellaneous databases

PROiQ9C5D2.

Gene expression databases

GenevisibleiQ9C5D2. AT.

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR001810. F-box_dom.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR006553. Leu-rich_rpt_Cys-con_subtyp.
[Graphical view]
PfamiPF12937. F-box-like. 1 hit.
PF13516. LRR_6. 6 hits.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
SM00367. LRR_CC. 17 hits.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana."
    Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C., Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P., Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.
    , Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R., De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M., Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M., Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A., Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D., Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A., Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S., Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G., Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.
    Nature 391:485-488(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  6. Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiFBL4_ARATH
AccessioniPrimary (citable) accession number: Q9C5D2
Secondary accession number(s): O23399, Q8LGK0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: June 1, 2001
Last modified: May 11, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.