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Q9C0A1

- ZFHX2_HUMAN

UniProt

Q9C0A1 - ZFHX2_HUMAN

Protein

Zinc finger homeobox protein 2

Gene

ZFHX2

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
    • BLAST
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    • History
      Entry version 114 (01 Oct 2014)
      Sequence version 3 (13 Jul 2010)
      Previous versions | rss
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    Functioni

    May be involved in transcriptional regulation.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri821 – 84525C2H2-type 4PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri870 – 89425C2H2-type 5PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1009 – 103224C2H2-type 6PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1191 – 121727C2H2-type 7PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1248 – 127225C2H2-type 8PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1480 – 150324C2H2-type 9PROSITE-ProRule annotationAdd
    BLAST
    DNA bindingi1595 – 165460Homeobox 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1670 – 169627C2H2-type 10; degeneratePROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1769 – 179123C2H2-type 11PROSITE-ProRule annotationAdd
    BLAST
    DNA bindingi1857 – 191660Homeobox 2PROSITE-ProRule annotationAdd
    BLAST
    DNA bindingi2065 – 212460Homeobox 3PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri2451 – 247222C2H2-type 12; degeneratePROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri2495 – 251925C2H2-type 13PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. sequence-specific DNA binding Source: InterPro
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. zinc ion binding Source: InterPro

    GO - Biological processi

    1. adult behavior Source: Ensembl
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Activator, Repressor

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding, Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Zinc finger homeobox protein 2
    Alternative name(s):
    Zinc finger homeodomain protein 2
    Short name:
    ZFH-2
    Gene namesi
    Name:ZFHX2
    Synonyms:KIAA1056, KIAA1762, ZNF409
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 14

    Organism-specific databases

    HGNCiHGNC:20152. ZFHX2.

    Subcellular locationi

    Nucleus Curated

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 25722572Zinc finger homeobox protein 2PRO_0000047243Add
    BLAST

    Proteomic databases

    PaxDbiQ9C0A1.
    PRIDEiQ9C0A1.

    PTM databases

    PhosphoSiteiQ9C0A1.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9C0A1.
    BgeeiQ9C0A1.
    CleanExiHS_ZFHX2.
    GenevestigatoriQ9C0A1.

    Organism-specific databases

    HPAiHPA000720.
    HPA005146.

    Interactioni

    Protein-protein interaction databases

    BioGridi124533. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9C0A1.
    SMRiQ9C0A1. Positions 444-542, 757-782, 977-1038, 1189-1217, 1238-1272, 1600-1658, 1853-1914, 2063-2122.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi605 – 710106Pro-richAdd
    BLAST
    Compositional biasi1061 – 114484Pro-richAdd
    BLAST
    Compositional biasi1321 – 1471151Pro-richAdd
    BLAST
    Compositional biasi1699 – 175961Glu-richAdd
    BLAST
    Compositional biasi1921 – 201898Pro-richAdd
    BLAST
    Compositional biasi2193 – 2424232Pro-richAdd
    BLAST

    Sequence similaritiesi

    Contains 13 C2H2-type zinc fingers.PROSITE-ProRule annotation
    Contains 3 homeobox DNA-binding domains.PROSITE-ProRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri821 – 84525C2H2-type 4PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri870 – 89425C2H2-type 5PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1009 – 103224C2H2-type 6PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1191 – 121727C2H2-type 7PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1248 – 127225C2H2-type 8PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1480 – 150324C2H2-type 9PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1670 – 169627C2H2-type 10; degeneratePROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri1769 – 179123C2H2-type 11PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri2451 – 247222C2H2-type 12; degeneratePROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri2495 – 251925C2H2-type 13PROSITE-ProRule annotationAdd
    BLAST

    Keywords - Domaini

    Homeobox, Repeat, Zinc-finger

    Phylogenomic databases

    eggNOGiNOG272646.
    HOGENOMiHOG000128272.
    HOVERGENiHBG063719.
    InParanoidiQ9UPU6.
    KOiK09379.
    OMAiVVPECVE.
    OrthoDBiEOG7FR7FH.
    PhylomeDBiQ9C0A1.
    TreeFamiTF323288.

    Family and domain databases

    Gene3Di1.10.10.60. 3 hits.
    3.30.160.60. 2 hits.
    InterProiIPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    IPR027028. ZFHX2.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    IPR003604. Znf_U1.
    [Graphical view]
    PANTHERiPTHR24208:SF86. PTHR24208:SF86. 1 hit.
    PfamiPF00046. Homeobox. 3 hits.
    [Graphical view]
    SMARTiSM00389. HOX. 3 hits.
    SM00355. ZnF_C2H2. 15 hits.
    SM00451. ZnF_U1. 7 hits.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 3 hits.
    PROSITEiPS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 3 hits.
    PS00028. ZINC_FINGER_C2H2_1. 9 hits.
    PS50157. ZINC_FINGER_C2H2_2. 5 hits.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q9C0A1-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MATLNSASTT GTTPSPGHNA PSLPSDTFSS STPSDPVTKD PPAASSTSEN     50
    MRSSEPGGQL LESGCGLVPP KEIGEPQEGP DCGHFPPNDP GVEKDKEQEE 100
    EEEGLPPMDL SNHLFFTAGG EAYLVAKLSL PGGSELLLPK GFPWGEAGIK 150
    EEPSLPFLAY PPPSHLTALH IQHGFDPIQG FSSSDQILSH DTSAPSPAAC 200
    EERHGAFWSY QLAPNPPGDP KDGPMGNSGG NHVAVFWLCL LCRLGFSKPQ 250
    AFMDHTQSHG VKLTPAQYQG LSGSPAVLQE GDEGCKALIS FLEPKLPARP 300
    SSDIPLDNSS TVNMEANVAQ TEDGPPEAEV QALILLDEEV MALSPPSPPT 350
    ATWDPSPTQA KESPVAAGEA GPDWFPEGQE EDGGLCPPLN QSSPTSKEGG 400
    TLPAPVGSPE DPSDPPQPYR LADDYTPAPA AFQGLSLSSH MSLLHSRNSC 450
    KTLKCPKCNW HYKYQQTLDV HMREKHPESN SHCSYCSAGG AHPRLARGES 500
    YNCGYKPYRC DVCNYSTTTK GNLSIHMQSD KHLANLQGFQ AGPGGQGSPP 550
    EASLPPSAGD KEPKTKSSWQ CKVCSYETNI SRNLRIHMTS EKHMQNVLML 600
    HQGLPLGLPP GLMGPGPPPP PGATPTSPPE LFQYFGPQAL GQPQTPLAGP 650
    GLRPDKPLEA QLLLNGFHHV GAPARKFPTS APGSLSPDAH LPPSQLLGSS 700
    SDSLPTSPPP DDSLSLKVFR CLVCQAFSTD SLELLLYHCS IGRSLPEAEW 750
    KEVAGDTHRC KLCCYGTQLK ANFQLHLKTD KHAQKYQLAA HLREGGGAMG 800
    TPSPASLGDG APYGSVSPLH LRCNICDFES NSKEKMQLHA RGAAHEENSQ 850
    IYKFLLDMEG AEAGAELGLY HCLLCAWETP SRLAVLQHLR TPAHRDAQAQ 900
    RRLQLLQNGP TTEEGLAALQ SILSFSHGQL RTPGKAPVTP LAEPPTPEKD 950
    AQNKTEQLAS EETENKTGPS RDSANQTTVY CCPYCSFLSP ESSQVRAHTL 1000
    SQHAVQPKYR CPLCQEQLVG RPALHFHLSH LHNVVPECVE KLLLVATTVE 1050
    MTFTTKVLSA PTLSPLDNGQ EPPTHGPEPT PSRDQAAEGP NLTPEASPDP 1100
    LPEPPLASVE VPDKPSGSPG QPPSPAPSPV PEPDAQAEDV APPPTMAEEE 1150
    EGTTGELRSA EPAPADSRHP LTYRKTTNFA LDKFLDPARP YKCTVCKESF 1200
    TQKNILLVHY NSVSHLHKMK KAAIDPSAPA RGEAGAPPTT TAATDKPFKC 1250
    TVCRVSYNQS STLEIHMRSV LHQTRSRGTK TDSKIEGPER SQEEPKEGET 1300
    EGEVGTEKKG PDTSGFISGL PFLSPPPPPL DLHRFPAPLF TPPVLPPFPL 1350
    VPESLLKLQQ QQLLLPFYLH DLKVGPKLTL AGPAPVLSLP AATPPPPPQP 1400
    PKAELAEREW ERPPMAKEGN EAGPSSPPDP LPNEAARTAA KALLENFGFE 1450
    LVIQYNEGKQ AVPPPPTPPP PEALGGGDKL ACGACGKLFS NMLILKTHEE 1500
    HVHRRFLPFE ALSRYAAQFR KSYDSLYPPL AEPPKPPDGS LDSPVPHLGP 1550
    PFLVPEPEAG GTRAPEERSR AGGHWPIEEE ESSRGNLPPL VPAGRRFSRT 1600
    KFTEFQTQAL QSFFETSAYP KDGEVERLAS LLGLASRVVV VWFQNARQKA 1650
    RKNACEGGSM PTGGGTGGAS GCRRCHATFS CVFELVRHLK KCYDDQTLEE 1700
    EEEEAERGEE EEEVEEEEVE EEQGLEPPAG PEGPLPEPPD GEELSQAEAT 1750
    KAGGKEPEEK ATPSPSPAHT CDQCAISFSS QDLLTSHRRL HFLPSLQPSA 1800
    PPQLLDLPLL VFGERNPLVA ATSPMPGPPL KRKHEDGSLS PTGSEAGGGG 1850
    EGEPPRDKRL RTTILPEQLE ILYRWYMQDS NPTRKMLDCI SEEVGLKKRV 1900
    VQVWFQNTRA RERKGQFRST PGGVPSPAVK PPATATPASL PKFNLLLGKV 1950
    DDGTGREAPK REAPAFPYPT ATLASGPQPF LPPGKEATTP TPEPPLPLLP 2000
    PPPPSEEEGP EEPPKASPES EACSLSAGDL SDSSASSLAE PESPGAGGTS 2050
    GGPGGGTGVP DGMGQRRYRT QMSSLQLKIM KACYEAYRTP TMQECEVLGE 2100
    EIGLPKRVIQ VWFQNARAKE KKAKLQGTAA GSTGGSSEGL LAAQRTDCPY 2150
    CDVKYDFYVS CRGHLFSRQH LAKLKEAVRA QLKSESKCYD LAPAPEAPPA 2200
    LKAPPATTPA SMPLGAAPTL PRLAPVLLSG PALAQPPLGN LAPFNSGPAA 2250
    SSGLLGLATS VLPTTTVVQT AGPGRPLPQR PMPDQTNTST AGTTDPVPGP 2300
    PTEPLGDKVS SERKPVAGPT SSSNDALKNL KALKTTVPAL LGGQFLPFPL 2350
    PPAGGTAPPA VFGPQLQGAY FQQLYGMKKG LFPMNPMIPQ TLIGLLPNAL 2400
    LQPPPQPPEP TATAPPKPPE LPAPGEGEAG EVDELLTGST GISTVDVTHR 2450
    YLCRQCKMAF DGEAPATAHQ RSFCFFGRGS GGSMPPPLRV PICTYHCLAC 2500
    EVLLSGREAL ASHLRSSAHR RKAAPPQGGP PISITNAATA ASAAVAFAKE 2550
    EARLPHTDSN PKTTTTSTLL AL 2572
    Length:2,572
    Mass (Da):274,176
    Last modified:July 13, 2010 - v3
    Checksum:i239C8050F65B25C2
    GO
    Isoform 2 (identifier: Q9C0A1-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         854-862: FLLDMEGAE → RTETGLLIK
         863-2572: Missing.

    Show »
    Length:862
    Mass (Da):91,826
    Checksum:i4F3A14A941E610B7
    GO

    Sequence cautioni

    The sequence BAA83008.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti473 – 4731R → Q in BAA83008. (PubMed:11214970)Curated
    Sequence conflicti550 – 5501P → T in BAA83008. (PubMed:11214970)Curated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei854 – 8629FLLDMEGAE → RTETGLLIK in isoform 2. 1 PublicationVSP_039496
    Alternative sequencei863 – 25721710Missing in isoform 2. 1 PublicationVSP_039497Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB028979 mRNA. Translation: BAA83008.2. Different initiation.
    AB051549 mRNA. Translation: BAB21853.1.
    AL132855 Genomic DNA. No translation available.
    AL135999 Genomic DNA. No translation available.
    CCDSiCCDS55907.1. [Q9C0A1-1]
    RefSeqiNP_207646.2. NM_033400.2. [Q9C0A1-1]
    XP_005268191.1. XM_005268134.1. [Q9C0A1-1]
    UniGeneiHs.508937.

    Genome annotation databases

    EnsembliENST00000419474; ENSP00000413418; ENSG00000136367. [Q9C0A1-1]
    GeneIDi85446.
    KEGGihsa:85446.
    UCSCiuc010akq.3. human. [Q9C0A1-1]

    Polymorphism databases

    DMDMi300669698.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB028979 mRNA. Translation: BAA83008.2 . Different initiation.
    AB051549 mRNA. Translation: BAB21853.1 .
    AL132855 Genomic DNA. No translation available.
    AL135999 Genomic DNA. No translation available.
    CCDSi CCDS55907.1. [Q9C0A1-1 ]
    RefSeqi NP_207646.2. NM_033400.2. [Q9C0A1-1 ]
    XP_005268191.1. XM_005268134.1. [Q9C0A1-1 ]
    UniGenei Hs.508937.

    3D structure databases

    ProteinModelPortali Q9C0A1.
    SMRi Q9C0A1. Positions 444-542, 757-782, 977-1038, 1189-1217, 1238-1272, 1600-1658, 1853-1914, 2063-2122.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 124533. 1 interaction.

    PTM databases

    PhosphoSitei Q9C0A1.

    Polymorphism databases

    DMDMi 300669698.

    Proteomic databases

    PaxDbi Q9C0A1.
    PRIDEi Q9C0A1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000419474 ; ENSP00000413418 ; ENSG00000136367 . [Q9C0A1-1 ]
    GeneIDi 85446.
    KEGGi hsa:85446.
    UCSCi uc010akq.3. human. [Q9C0A1-1 ]

    Organism-specific databases

    CTDi 85446.
    GeneCardsi GC14M023990.
    H-InvDB HIX0011544.
    HIX0172362.
    HGNCi HGNC:20152. ZFHX2.
    HPAi HPA000720.
    HPA005146.
    neXtProti NX_Q9C0A1.
    HUGEi Search...
    Search...
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG272646.
    HOGENOMi HOG000128272.
    HOVERGENi HBG063719.
    InParanoidi Q9UPU6.
    KOi K09379.
    OMAi VVPECVE.
    OrthoDBi EOG7FR7FH.
    PhylomeDBi Q9C0A1.
    TreeFami TF323288.

    Miscellaneous databases

    GenomeRNAii 85446.
    NextBioi 76049.
    PROi Q9C0A1.

    Gene expression databases

    ArrayExpressi Q9C0A1.
    Bgeei Q9C0A1.
    CleanExi HS_ZFHX2.
    Genevestigatori Q9C0A1.

    Family and domain databases

    Gene3Di 1.10.10.60. 3 hits.
    3.30.160.60. 2 hits.
    InterProi IPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    IPR027028. ZFHX2.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    IPR003604. Znf_U1.
    [Graphical view ]
    PANTHERi PTHR24208:SF86. PTHR24208:SF86. 1 hit.
    Pfami PF00046. Homeobox. 3 hits.
    [Graphical view ]
    SMARTi SM00389. HOX. 3 hits.
    SM00355. ZnF_C2H2. 15 hits.
    SM00451. ZnF_U1. 7 hits.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 3 hits.
    PROSITEi PS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 3 hits.
    PS00028. ZINC_FINGER_C2H2_1. 9 hits.
    PS50157. ZINC_FINGER_C2H2_2. 5 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
      Nagase T., Kikuno R., Hattori A., Kondo Y., Okumura K., Ohara O.
      DNA Res. 7:347-355(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1113-2572 (ISOFORM 1).
      Tissue: Brain.
    2. "The DNA sequence and analysis of human chromosome 14."
      Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H.
      , Pepin K., Artiguenave F., Robert C., Cruaud C., Bruels T., Jaillon O., Friedlander L., Samson G., Brottier P., Cure S., Segurens B., Aniere F., Samain S., Crespeau H., Abbasi N., Aiach N., Boscus D., Dickhoff R., Dors M., Dubois I., Friedman C., Gouyvenoux M., James R., Madan A., Mairey-Estrada B., Mangenot S., Martins N., Menard M., Oztas S., Ratcliffe A., Shaffer T., Trask B., Vacherie B., Bellemere C., Belser C., Besnard-Gonnet M., Bartol-Mavel D., Boutard M., Briez-Silla S., Combette S., Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C., Muselet D., Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P., Trybou A., Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M., Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V., Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L., Verdier J., Verdier-Discala C., Hillier L.W., Fulton L., McPherson J., Matsuda F., Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W., Quetier F., Waterston R., Hood L., Weissenbach J.
      Nature 421:601-607(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiZFHX2_HUMAN
    AccessioniPrimary (citable) accession number: Q9C0A1
    Secondary accession number(s): Q9UPU6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 12, 2003
    Last sequence update: July 13, 2010
    Last modified: October 1, 2014
    This is version 114 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 14
      Human chromosome 14: entries, gene names and cross-references to MIM
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3