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Q9C030

- TRIM6_HUMAN

UniProt

Q9C030 - TRIM6_HUMAN

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Protein
Tripartite motif-containing protein 6
Gene
TRIM6, RNF89
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri15 – 6046RING-type
Add
BLAST
Zinc fingeri92 – 13342B box-type
Add
BLAST

GO - Molecular functioni

  1. zinc ion binding Source: InterPro

GO - Biological processi

  1. protein trimerization Source: UniProtKB
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Tripartite motif-containing protein 6
Alternative name(s):
RING finger protein 89
Gene namesi
Name:TRIM6
Synonyms:RNF89
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 11

Organism-specific databases

HGNCiHGNC:16277. TRIM6.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB
Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA38110.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 488488Tripartite motif-containing protein 6
PRO_0000056202Add
BLAST

Proteomic databases

MaxQBiQ9C030.
PaxDbiQ9C030.
PRIDEiQ9C030.

PTM databases

PhosphoSiteiQ9C030.

Expressioni

Gene expression databases

ArrayExpressiQ9C030.
BgeeiQ9C030.
GenevestigatoriQ9C030.

Organism-specific databases

HPAiHPA052690.
HPA060514.

Interactioni

Subunit structurei

Homomultimer Inferred.1 Publication

Protein-protein interaction databases

BioGridi125596. 6 interactions.
MINTiMINT-6631743.
STRINGi9606.ENSP00000369440.

Structurei

3D structure databases

ProteinModelPortaliQ9C030.
SMRiQ9C030. Positions 5-78, 97-131, 275-486.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini282 – 488207B30.2/SPRY
Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili134 – 248115 Reviewed prediction
Add
BLAST

Sequence similaritiesi

Belongs to the TRIM/RBCC family.
Contains 1 B30.2/SPRY domain.

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

eggNOGiNOG259921.
HOGENOMiHOG000234134.
HOVERGENiHBG001357.
KOiK11999.
OMAiNHEYRAY.
OrthoDBiEOG7RJPR6.
PhylomeDBiQ9C030.
TreeFamiTF342569.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
4.10.45.10. 1 hit.
InterProiIPR001870. B30.2/SPRY.
IPR003879. Butyrophylin.
IPR008985. ConA-like_lec_gl_sf.
IPR006574. PRY.
IPR018355. SPla/RYanodine_receptor_subgr.
IPR003877. SPRY_rcpt.
IPR000315. Znf_B-box.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamiPF00622. SPRY. 1 hit.
PF00643. zf-B_box. 1 hit.
[Graphical view]
PRINTSiPR01407. BUTYPHLNCDUF.
SMARTiSM00336. BBOX. 1 hit.
SM00589. PRY. 1 hit.
SM00184. RING. 1 hit.
SM00449. SPRY. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS50188. B302_SPRY. 1 hit.
PS50119. ZF_BBOX. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9C030-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MTSPVLVDIR EEVTCPICLE LLTEPLSIDC GHSFCQACIT PNGRESVIGQ    50
EGERSCPVCQ TSYQPGNLRP NRHLANIVRR LREVVLGPGK QLKAVLCADH 100
GEKLQLFCQE DGKVICWLCE RSQEHRGHHT FLVEEVAQEY QEKFQESLKK 150
LKNEEQEAEK LTAFIREKKT SWKNQMEPER CRIQTEFNQL RNILDRVEQR 200
ELKKLEQEEK KGLRIIEEAE NDLVHQTQSL RELISDLERR CQGSTMELLQ 250
DVSDVTERSE FWTLRKPEAL PTKLRSMFRA PDLKRMLRVC RELTDVQSYW 300
VDVTLNPHTA NLNLVLAKNR RQVRFVGAKV SGPSCLEKHY DCSVLGSQHF 350
SSGKHYWEVD VAKKTAWILG VCSNSLGPTF SFNHFAQNHS AYSRYQPQSG 400
YWVIGLQHNH EYRAYEDSSP SLLLSMTVPP RRVGVFLDYE AGTVSFYNVT 450
NHGFPIYTFS KYYFPTTLCP YFNPCNCVIP MTLRRPSS 488
Length:488
Mass (Da):56,400
Last modified:June 1, 2001 - v1
Checksum:iF6AEC6BF578E9E72
GO
Isoform 2 (identifier: Q9C030-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MCGSERILQAGNILEIRVGQAGARRVATM

Show »
Length:516
Mass (Da):59,353
Checksum:i728D531A6FC6BABD
GO
Isoform 3 (identifier: Q9C030-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-175: Missing.

Note: No experimental confirmation available.

Show »
Length:313
Mass (Da):36,400
Checksum:iBC1F6158D0815F6A
GO

Sequence cautioni

The sequence BAB17050.1 differs from that shown. Reason: Chimeric cDNA. The biological existence and relevance of this transcript product of both TRIM34 (AC Q9BYJ4) and TRIM6 genes and coding for a chimeric protein of 842 residues is uncertain.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti154 – 1541E → K.
Corresponds to variant rs57856328 [ dbSNP | Ensembl ].
VAR_061823

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 175175Missing in isoform 3.
VSP_046924Add
BLAST
Alternative sequencei1 – 11M → MCGSERILQAGNILEIRVGQ AGARRVATM in isoform 2.
VSP_012087

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti68 – 692LR → FG in BAB17050. 1 Publication
Sequence conflicti184 – 1841Q → K in AAH47564. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF220030 mRNA. Translation: AAG53484.1.
AK027664 mRNA. Translation: BAB55276.1.
AK290172 mRNA. Translation: BAF82861.1.
AK293295 mRNA. Translation: BAG56816.1.
AK298301 mRNA. Translation: BAG60556.1.
AK316178 mRNA. Translation: BAH14549.1.
AK316289 mRNA. Translation: BAH14660.1.
AC015691 Genomic DNA. No translation available.
CH471064 Genomic DNA. Translation: EAW68783.1.
CH471064 Genomic DNA. Translation: EAW68785.1.
BC047564 mRNA. Translation: AAH47564.1.
AB039903 mRNA. Translation: BAB17050.1. Sequence problems.
CCDSiCCDS31389.1. [Q9C030-2]
CCDS31390.1. [Q9C030-1]
CCDS55738.1. [Q9C030-3]
RefSeqiNP_001003818.1. NM_001003818.2. [Q9C030-2]
NP_001185573.1. NM_001198644.1. [Q9C030-3]
NP_001185574.1. NM_001198645.1. [Q9C030-3]
NP_477514.1. NM_058166.4. [Q9C030-1]
UniGeneiHs.729048.

Genome annotation databases

EnsembliENST00000278302; ENSP00000278302; ENSG00000121236. [Q9C030-1]
ENST00000380097; ENSP00000369440; ENSG00000121236. [Q9C030-2]
ENST00000445329; ENSP00000399215; ENSG00000121236. [Q9C030-3]
ENST00000506134; ENSP00000421079; ENSG00000121236. [Q9C030-3]
ENST00000507320; ENSP00000427704; ENSG00000121236. [Q9C030-3]
ENST00000515022; ENSP00000421802; ENSG00000121236. [Q9C030-3]
GeneIDi117854.
KEGGihsa:117854.
UCSCiuc001mbc.2. human. [Q9C030-1]
uc001mbd.3. human. [Q9C030-2]

Polymorphism databases

DMDMi25009488.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF220030 mRNA. Translation: AAG53484.1 .
AK027664 mRNA. Translation: BAB55276.1 .
AK290172 mRNA. Translation: BAF82861.1 .
AK293295 mRNA. Translation: BAG56816.1 .
AK298301 mRNA. Translation: BAG60556.1 .
AK316178 mRNA. Translation: BAH14549.1 .
AK316289 mRNA. Translation: BAH14660.1 .
AC015691 Genomic DNA. No translation available.
CH471064 Genomic DNA. Translation: EAW68783.1 .
CH471064 Genomic DNA. Translation: EAW68785.1 .
BC047564 mRNA. Translation: AAH47564.1 .
AB039903 mRNA. Translation: BAB17050.1 . Sequence problems.
CCDSi CCDS31389.1. [Q9C030-2 ]
CCDS31390.1. [Q9C030-1 ]
CCDS55738.1. [Q9C030-3 ]
RefSeqi NP_001003818.1. NM_001003818.2. [Q9C030-2 ]
NP_001185573.1. NM_001198644.1. [Q9C030-3 ]
NP_001185574.1. NM_001198645.1. [Q9C030-3 ]
NP_477514.1. NM_058166.4. [Q9C030-1 ]
UniGenei Hs.729048.

3D structure databases

ProteinModelPortali Q9C030.
SMRi Q9C030. Positions 5-78, 97-131, 275-486.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 125596. 6 interactions.
MINTi MINT-6631743.
STRINGi 9606.ENSP00000369440.

PTM databases

PhosphoSitei Q9C030.

Polymorphism databases

DMDMi 25009488.

Proteomic databases

MaxQBi Q9C030.
PaxDbi Q9C030.
PRIDEi Q9C030.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000278302 ; ENSP00000278302 ; ENSG00000121236 . [Q9C030-1 ]
ENST00000380097 ; ENSP00000369440 ; ENSG00000121236 . [Q9C030-2 ]
ENST00000445329 ; ENSP00000399215 ; ENSG00000121236 . [Q9C030-3 ]
ENST00000506134 ; ENSP00000421079 ; ENSG00000121236 . [Q9C030-3 ]
ENST00000507320 ; ENSP00000427704 ; ENSG00000121236 . [Q9C030-3 ]
ENST00000515022 ; ENSP00000421802 ; ENSG00000121236 . [Q9C030-3 ]
GeneIDi 117854.
KEGGi hsa:117854.
UCSCi uc001mbc.2. human. [Q9C030-1 ]
uc001mbd.3. human. [Q9C030-2 ]

Organism-specific databases

CTDi 117854.
GeneCardsi GC11P005617.
HGNCi HGNC:16277. TRIM6.
HPAi HPA052690.
HPA060514.
MIMi 607564. gene.
neXtProti NX_Q9C030.
PharmGKBi PA38110.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG259921.
HOGENOMi HOG000234134.
HOVERGENi HBG001357.
KOi K11999.
OMAi NHEYRAY.
OrthoDBi EOG7RJPR6.
PhylomeDBi Q9C030.
TreeFami TF342569.

Miscellaneous databases

ChiTaRSi TRIM6. human.
GeneWikii TRIM6.
GenomeRNAii 117854.
NextBioi 80243.
PROi Q9C030.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9C030.
Bgeei Q9C030.
Genevestigatori Q9C030.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
4.10.45.10. 1 hit.
InterProi IPR001870. B30.2/SPRY.
IPR003879. Butyrophylin.
IPR008985. ConA-like_lec_gl_sf.
IPR006574. PRY.
IPR018355. SPla/RYanodine_receptor_subgr.
IPR003877. SPRY_rcpt.
IPR000315. Znf_B-box.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view ]
Pfami PF00622. SPRY. 1 hit.
PF00643. zf-B_box. 1 hit.
[Graphical view ]
PRINTSi PR01407. BUTYPHLNCDUF.
SMARTi SM00336. BBOX. 1 hit.
SM00589. PRY. 1 hit.
SM00184. RING. 1 hit.
SM00449. SPRY. 1 hit.
[Graphical view ]
SUPFAMi SSF49899. SSF49899. 1 hit.
PROSITEi PS50188. B302_SPRY. 1 hit.
PS50119. ZF_BBOX. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBUNIT.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3).
    Tissue: Astrocyte, Fetal kidney, Kidney, Placenta and Thalamus.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Testis.
  6. "Molecular cloning of ring finger protein 21 (RNF21)/interferon-responsive finger protein (ifp1), which possesses two RING-B box-coiled coil domains in tandem."
    Orimo A., Tominaga N., Yoshimura K., Yamauchi Y., Nomura M., Sato M., Nogi Y., Suzuki M., Suzuki H., Ikeda K., Inoue S., Muramatsu M.
    Genomics 69:143-149(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-300 (ISOFORM 2).

Entry informationi

Entry nameiTRIM6_HUMAN
AccessioniPrimary (citable) accession number: Q9C030
Secondary accession number(s): A8K2A7
, B4DDQ5, Q86WZ8, Q9HCR1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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