Q9C026 (TRIM9_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 124.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: E3 ubiquitin-protein ligase TRIM9 EC=6.3.2.- Alternative name(s): RING finger protein 91 Tripartite motif-containing protein 9 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 710 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | E3 ubiquitin-protein ligase which ubiquitinates itself in cooperation with an E2 enzyme UBE2D2/UBC4 and serves as a targeting signal for proteasomal degradation. May play a role in regulation of neuronal functions and may also participate in the formation or breakdown of abnormal inclusions in neurodegenerative disorders. May act as a regulator of synaptic vesicle exocytosis by controlling the availability of SNAP25 for the SNARE complex formation. Ref.7 |
| Pathway | |
| Subunit structure | Interacts with SNAP25 By similarity. |
| Subcellular location | Cytoplasm. Cell projection › dendrite. Cytoplasmic vesicle › secretory vesicle › synaptic vesicle By similarity. Cell junction › synapse By similarity. Cytoplasm › cytoskeleton By similarity. Note: Enriched at synaptic terminals where it exists in a soluble form and a synaptic vesicle-associated form. Associated with the cytoskeleton By similarity. Found in proximal dendrites of pyramidal neurons in the cerebral cortex and hippocampus, and Purkinje cells in the cerebellum. Ref.7 |
| Tissue specificity | Brain. Highly expressed in the cerebral cortex (at protein level). Severely decreased in the affected brain areas in Parkinson disease and dementia with Lewy bodies. Ref.7 |
| Domain | The coiled coil domain mediates the interaction with the N-terminal t-SNARE domain of SNAP25 By similarity. |
| Post-translational modification | Auto-ubiquitinated. Poly-ubiquitinated in cultured cells, whereas it is monoubiquitinated in vitro. |
| Sequence similarities | Belongs to the TRIM/RBCC family. Contains 2 B box-type zinc fingers. Contains 1 B30.2/SPRY domain. Contains 1 COS domain. Contains 1 fibronectin type-III domain. Contains 1 RING-type zinc finger. |
| Sequence caution | The sequence AAG53490.1 differs from that shown. Reason: Frameshift at position 660. The sequence AAG53492.1 differs from that shown. Reason: Frameshift at position 655. The sequence BAA13398.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence BAA13398.2 differs from that shown. Reason: Frameshift at position 660. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9C026-1) Also known as: Beta; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 4 (identifier: Q9C026-4) The sequence of this isoform differs from the canonical sequence as follows: 436-439: Missing. 534-534: E → EDTDSEEQTL...QLVDIKKLLA 692-710: TLHTGLPVPDFYSSRASIA → STLPLRLNSCCWLPVQRLPRAVQSNRREGS | ||||||
| Note: May be due to a competing donor splice site, to exon inclusion and to intron retention. | ||||||
| Isoform 5 (identifier: Q9C026-5) The sequence of this isoform differs from the canonical sequence as follows: 535-550: VAWFAFDPGSAHSDII → GKALQQYPSERELRGI 551-710: Missing. | ||||||
| Note: May be due to intron retention. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||
Molecule processing | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 710 | 710 | E3 ubiquitin-protein ligase TRIM9 | PRO_0000056208 | |||||||||||||||||||
Regions | |||||||||||||||||||||||
| Domain | 374 – 432 | 59 | COS | ||||||||||||||||||||
| Domain | 439 – 532 | 94 | Fibronectin type-III | ||||||||||||||||||||
| Domain | 533 – 702 | 170 | B30.2/SPRY | ||||||||||||||||||||
| Zinc finger | 10 – 50 | 41 | RING-type | ||||||||||||||||||||
| Zinc finger | 163 – 212 | 50 | B box-type 1 | ||||||||||||||||||||
| Zinc finger | 224 – 266 | 43 | B box-type 2 | ||||||||||||||||||||
| Coiled coil | 273 – 340 | 68 | Potential | ||||||||||||||||||||
Natural variations | |||||||||||||||||||||||
| Alternative sequence | 436 – 439 | 4 | Missing in isoform 4. | VSP_007922 | |||||||||||||||||||
| Alternative sequence | 534 | 1 | E → EDTDSEEQTLPFPVPSERLP LRRMSPFSSTLNLQPSFPGR SYFDFRSSPHQLSLHSSLQS LNAPGCNFETQSAPYSQLVD IKKLLA in isoform 4. | VSP_007923 | |||||||||||||||||||
| Alternative sequence | 535 – 550 | 16 | VAWFA…HSDII → GKALQQYPSERELRGI in isoform 5. | VSP_007925 | |||||||||||||||||||
| Alternative sequence | 551 – 710 | 160 | Missing in isoform 5. | VSP_007926 | |||||||||||||||||||
| Alternative sequence | 692 – 710 | 19 | TLHTG…RASIA → STLPLRLNSCCWLPVQRLPR AVQSNRREGS in isoform 4. | VSP_007924 | |||||||||||||||||||
| Natural variant | 653 | 1 | L → F. Ref.1 Ref.2 Ref.6 Corresponds to variant rs2275462 [ dbSNP | Ensembl ]. | VAR_016202 | |||||||||||||||||||
Experimental info | |||||||||||||||||||||||
| Sequence conflict | 314 | 1 | A → V in BAB70913. Ref.2 | ||||||||||||||||||||
| Sequence conflict | 384 | 1 | Q → R in BAB70913. Ref.2 | ||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||
| Beta strand | 454 – 460 | 7 | |||||||||||||||||||||
| Beta strand | 473 – 479 | 7 | |||||||||||||||||||||
| Beta strand | 482 – 485 | 4 | |||||||||||||||||||||
| Beta strand | 488 – 494 | 7 | |||||||||||||||||||||
| Beta strand | 498 – 501 | 4 | |||||||||||||||||||||
| Beta strand | 505 – 507 | 3 | |||||||||||||||||||||
| Beta strand | 510 – 516 | 7 | |||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The tripartite motif family identifies cell compartments." Reymond A., Meroni G., Fantozzi A., Merla G., Cairo S., Luzi L., Riganelli D., Zanaria E., Messali S., Cainarca S., Guffanti A., Minucci S., Pelicci P.G., Ballabio A. EMBO J. 20:2140-2151(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT PHE-653. |
| [2] | "Construction and characterization of human brain cDNA libraries suitable for analysis of cDNA clones encoding relatively large proteins." Ohara O., Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Nomura N. DNA Res. 4:53-59(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT PHE-653. Tissue: Brain. |
| [3] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SEQUENCE REVISION. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Fetal brain. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 5), VARIANT PHE-653. Tissue: Brain and Uterus. |
| [7] | "TRIM9, a novel brain-specific E3 ubiquitin ligase, is repressed in the brain of Parkinson's disease and dementia with Lewy bodies." Tanji K., Kamitani T., Mori F., Kakita A., Takahashi H., Wakabayashi K. Neurobiol. Dis. 38:210-218(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, AUTOUBIQUITINATION, TISSUE SPECIFICITY. |
| [8] | "Solution structures of the FN3 domain of human tripartite motif protein 9." RIKEN structural genomics initiative (RSGI) Submitted (JUN-2006) to the PDB data bank Cited for: STRUCTURE BY NMR OF 437-534. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF220036 mRNA. Translation: AAG53490.1. Frameshift. AF220037 mRNA. Translation: AAG53491.1. AF220038 mRNA. Translation: AAG53492.1. Frameshift. D87458 mRNA. Translation: BAA13398.2. Sequence problems. AK055388 mRNA. Translation: BAB70913.1. CH471078 Genomic DNA. Translation: EAW65680.1. CH471078 Genomic DNA. Translation: EAW65681.1. CH471078 Genomic DNA. Translation: EAW65682.1. CH471078 Genomic DNA. Translation: EAW65684.1. BC013414 mRNA. Translation: AAH13414.1. BC063872 mRNA. Translation: AAH63872.1. | ||||||||||||
| IPI | IPI00026828. IPI00102679. IPI00337362. | ||||||||||||
| RefSeq | NP_055978.4. NM_015163.5. NP_443210.1. NM_052978.4. | ||||||||||||
| UniGene | Hs.654750. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q9C026. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q9C026. 15 interactions. | ||||||||||||
| MINT | MINT-1478450. | ||||||||||||
| STRING | 9606.ENSP00000298355. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9C026. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 33516964. | ||||||||||||
2D gel databases | |||||||||||||
| REPRODUCTION-2DPAGE | Q9C026. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q9C026. | ||||||||||||
| PRIDE | Q9C026. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 114088. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000298355; ENSP00000298355; ENSG00000100505. ENST00000338969; ENSP00000342970; ENSG00000100505. ENST00000360392; ENSP00000353561; ENSG00000100505. | ||||||||||||
| GeneID | 114088. | ||||||||||||
| KEGG | hsa:114088. | ||||||||||||
| UCSC | uc001wyx.4. human. uc001wyy.2. human. uc001wyz.4. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 114088. | ||||||||||||
| GeneCards | GC14M051441. | ||||||||||||
| HGNC | HGNC:16288. TRIM9. | ||||||||||||
| MIM | 606555. gene. | ||||||||||||
| neXtProt | NX_Q9C026. | ||||||||||||
| PharmGKB | PA38116. | ||||||||||||
| HUGE | Search... | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG260378. | ||||||||||||
| HOVERGEN | HBG062305. | ||||||||||||
| KO | K10649. | ||||||||||||
| OMA | LDLDKMS. | ||||||||||||
| OrthoDB | EOG46HG97. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Reactome | REACT_6900. Immune System. | ||||||||||||
| UniPathway | UPA00143. | ||||||||||||
Gene expression databases | |||||||||||||
| Bgee | Q9C026. | ||||||||||||
| CleanEx | HS_TRIM9. | ||||||||||||
| Genevestigator | Q9C026. | ||||||||||||
| GermOnline | ENSG00000100505. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 2.60.40.10. 1 hit. 3.30.40.10. 2 hits. 4.10.45.10. 1 hit. | ||||||||||||
| InterPro | IPR001870. B30.2/SPRY. IPR003649. Bbox_C. IPR008985. ConA-like_lec_gl_sf. IPR017903. COS_domain. IPR003961. Fibronectin_type3. IPR013783. Ig-like_fold. IPR003877. SPRY_rcpt. IPR000315. Znf_B-box. IPR001841. Znf_RING. IPR013083. Znf_RING/FYVE/PHD. IPR017907. Znf_RING_CS. [Graphical view] | ||||||||||||
| Pfam | PF00041. fn3. 1 hit. PF00622. SPRY. 1 hit. PF00643. zf-B_box. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00502. BBC. 1 hit. SM00336. BBOX. 2 hits. SM00060. FN3. 1 hit. SM00184. RING. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF49899. ConA_like_lec_gl. 1 hit. SSF49265. FN_III-like. 1 hit. | ||||||||||||
| PROSITE | PS50188. B302_SPRY. 1 hit. PS51262. COS. 1 hit. PS50853. FN3. 1 hit. PS50119. ZF_BBOX. 2 hits. PS00518. ZF_RING_1. 1 hit. PS50089. ZF_RING_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| EvolutionaryTrace | Q9C026. | ||||||||||||
| GenomeRNAi | 114088. | ||||||||||||
| NextBio | 78980. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | TRIM9_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9C026 Secondary accession number(s): D3DSB7 Q9C027 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
