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Protein

Forkhead box protein Q1

Gene

FOXQ1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Plays a role in hair follicle differentiation.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi119 – 21496Fork-headPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

SignaLinkiQ9C009.

Names & Taxonomyi

Protein namesi
Recommended name:
Forkhead box protein Q1
Alternative name(s):
HNF-3/forkhead-like protein 1
Short name:
HFH-1
Hepatocyte nuclear factor 3 forkhead homolog 1
Gene namesi
Name:FOXQ1
Synonyms:HFH1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:20951. FOXQ1.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134924898.

Polymorphism and mutation databases

BioMutaiFOXQ1.
DMDMi143811391.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 403403Forkhead box protein Q1PRO_0000091890Add
BLAST

Proteomic databases

MaxQBiQ9C009.
PaxDbiQ9C009.
PRIDEiQ9C009.

PTM databases

PhosphoSiteiQ9C009.

Expressioni

Tissue specificityi

Expressed predominantly in the stomach, trachea, bladder and salivary gland.1 Publication

Gene expression databases

BgeeiQ9C009.
CleanExiHS_FOXQ1.
GenevisibleiQ9C009. HS.

Organism-specific databases

HPAiHPA066032.

Interactioni

Protein-protein interaction databases

BioGridi125147. 1 interaction.
IntActiQ9C009. 1 interaction.
MINTiMINT-6610604.
STRINGi9606.ENSP00000296839.

Structurei

3D structure databases

ProteinModelPortaliQ9C009.
SMRiQ9C009. Positions 124-198.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi13 – 10391Ala/Gly-richAdd
BLAST
Compositional biasi221 – 397177Pro-richAdd
BLAST

Sequence similaritiesi

Contains 1 fork-head DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG5025.
GeneTreeiENSGT00780000121840.
HOGENOMiHOG000112634.
HOVERGENiHBG051658.
InParanoidiQ9C009.
KOiK09410.
OMAiPAKPFRG.
OrthoDBiEOG708W0T.
PhylomeDBiQ9C009.
TreeFamiTF316127.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001766. TF_fork_head.
IPR018122. TF_fork_head_CS_1.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Fork_head. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
PROSITEiPS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9C009-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLEVFVPRA AHGDKQGSDL EGAGGSDAPS PLSAAGDDSL GSDGDCAANS
60 70 80 90 100
PAAGGGARDT QGDGEQSAGG GPGAEEAIPA AAAAAVVAEG AEAGAAGPGA
110 120 130 140 150
GGAGSGEGAR SKPYTRRPKP PYSYIALIAM AIRDSAGGRL TLAEINEYLM
160 170 180 190 200
GKFPFFRGSY TGWRNSVRHN LSLNDCFVKV LRDPSRPWGK DNYWMLNPNS
210 220 230 240 250
EYTFADGVFR RRRKRLSHRA PVPAPGLRPE EAPGLPAAPP PAPAAPASPR
260 270 280 290 300
MRSPARQEER ASPAGKFSSS FAIDSILRKP FRSRRLRDTA PGTTLQWGAA
310 320 330 340 350
PCPPLPAFPA LLPAAPCRAL LPLCAYGAGE PARLGAREAE VPPTAPPLLL
360 370 380 390 400
APLPAAAPAK PLRGPAAGGA HLYCPLRLPA ALQAASVRRP GPHLPYPVET

LLA
Length:403
Mass (Da):41,526
Last modified:April 3, 2007 - v2
Checksum:i0709E0A6A0AE2174
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti49 – 524NSPA → KPS in AAF75586 (PubMed:11309849).Curated
Sequence conflicti386 – 3861S → L in AAF75586 (PubMed:11309849).Curated
Sequence conflicti395 – 3951P → S in AAF75586 (PubMed:11309849).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti60 – 601T → P.2 Publications
Corresponds to variant rs9502889 [ dbSNP | Ensembl ].
VAR_031606
Natural varianti61 – 611Q → P.2 Publications
Corresponds to variant rs9502890 [ dbSNP | Ensembl ].
VAR_031607

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF225950 Genomic DNA. Translation: AAK00639.1.
AF153341 Genomic DNA. Translation: AAF75586.1.
BC053850 mRNA. Translation: AAH53850.1.
CCDSiCCDS4471.1.
RefSeqiNP_150285.3. NM_033260.3.
UniGeneiHs.591352.

Genome annotation databases

EnsembliENST00000296839; ENSP00000296839; ENSG00000164379.
GeneIDi94234.
KEGGihsa:94234.
UCSCiuc003mtl.4. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF225950 Genomic DNA. Translation: AAK00639.1.
AF153341 Genomic DNA. Translation: AAF75586.1.
BC053850 mRNA. Translation: AAH53850.1.
CCDSiCCDS4471.1.
RefSeqiNP_150285.3. NM_033260.3.
UniGeneiHs.591352.

3D structure databases

ProteinModelPortaliQ9C009.
SMRiQ9C009. Positions 124-198.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi125147. 1 interaction.
IntActiQ9C009. 1 interaction.
MINTiMINT-6610604.
STRINGi9606.ENSP00000296839.

PTM databases

PhosphoSiteiQ9C009.

Polymorphism and mutation databases

BioMutaiFOXQ1.
DMDMi143811391.

Proteomic databases

MaxQBiQ9C009.
PaxDbiQ9C009.
PRIDEiQ9C009.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000296839; ENSP00000296839; ENSG00000164379.
GeneIDi94234.
KEGGihsa:94234.
UCSCiuc003mtl.4. human.

Organism-specific databases

CTDi94234.
GeneCardsiGC06P001312.
H-InvDBHIX0025221.
HGNCiHGNC:20951. FOXQ1.
HPAiHPA066032.
MIMi612788. gene.
neXtProtiNX_Q9C009.
PharmGKBiPA134924898.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG5025.
GeneTreeiENSGT00780000121840.
HOGENOMiHOG000112634.
HOVERGENiHBG051658.
InParanoidiQ9C009.
KOiK09410.
OMAiPAKPFRG.
OrthoDBiEOG708W0T.
PhylomeDBiQ9C009.
TreeFamiTF316127.

Enzyme and pathway databases

SignaLinkiQ9C009.

Miscellaneous databases

GenomeRNAii94234.
NextBioi78472.
PROiQ9C009.
SOURCEiSearch...

Gene expression databases

BgeeiQ9C009.
CleanExiHS_FOXQ1.
GenevisibleiQ9C009. HS.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001766. TF_fork_head.
IPR018122. TF_fork_head_CS_1.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Fork_head. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
PROSITEiPS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation and characterization of the human forkhead gene FOXQ1."
    Bieller A., Pasche B., Frank S., Glaeser B., Kunz J., Witt K., Zoll B.
    DNA Cell Biol. 20:555-561(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, VARIANTS PRO-60 AND PRO-61.
  2. "The winged helix/forkhead transcription factor Foxq1 regulates differentiation of hair in satin mice."
    Hong H.-K., Noveroske J.K., Headon D.J., Liu T., Sy M.S., Justice M.J., Chakravarti A.
    Genesis 29:163-171(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS PRO-60 AND PRO-61.
    Tissue: Lung.

Entry informationi

Entry nameiFOXQ1_HUMAN
AccessioniPrimary (citable) accession number: Q9C009
Secondary accession number(s): Q9NS06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 27, 2003
Last sequence update: April 3, 2007
Last modified: June 24, 2015
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.